Non-Coding RNA Search

Ss1.1-Pig3-SRG8013N17.3.5

Sequence:


               
               CTCGTTATGCCCTGATACAGTGGTCACAAAGCCAAGAAAGGCATCCCCCTGTGCCCGTGT
GTCAAGCACACCTGGGACCAATCGGATAACTTTTAAAGCAGGACCATCTGTCAGTGCACG
TATGCAGGCGGTGTGGAAAGAGACGGTGGCAGCAGGAACATCTCTGTCCCCAGCATTGGC
TCTGCAAGTGCGTGGTGAATCTCCCAGTCGGCCTCTTGGTGCTGTGGGTTGCCAGGGAGG
ACCAATGTCACCCTGAGAAATGTTTCTCTTAGTCTTTAGATTCGAAGACTGTACCTATAG
ATAGCAGATTTTCCAAAAAGGGGTTTTCCAGGCTGCATTTTGTTGTGGTTTTTGTCTAAA
TTTTTAACAACCATTTCCCAGGACCATAGTTTACTGAAAACTGGGAGTGGGAGTGGGTGG
CCGCTTTGTTGTTAATCAGCTCCTGTTTCCCCATGGAGACCCTCACCCTTTCCTTCTGCC
CTTCCCCACACAGTTTGGGGAGAAGTCCATGCTTCCCTGTGAGGATCACCTCTAAATGTG
GGAGGAGATGGGGGGAGAAGGCAGCCCATGCTCCCCTGAGCTGACCTGGAGGAAAGCAGC
CCGGGACAAGGACTGCTGGCAAAAGGAAAATACGGCAGCATCTGTGGGTGAGGTCTGAGG
TGCGAGATTGGAGATGTCCCAGGAAATCTGGGGCAAATGGAAAGACACATTTTACCATTC
AGTGCAAATCTTGCTCCTTCGATGTAATAGAGTGTATTTAGAGAGGAGGTGGGAGCGAGT
CACTTCCTTGGGTGGTGGTATCATTTTCATGAACACCTTTGATCCTTAGGTTTCATCCAT
TCATTCAACAAATATTCACTAAGCACTTACTAACAACCTAAGCTAATGCTAGGGCAACGT
CCAAGGTGGAAGAACAGCTCTTCAGAATTACAGCAGAATTCAGCTCCTCAAACCTGTCAA
CCCAGGAGACCTTTCCTCGTGGTTTCTGTGAGAATTGGCCACCTGAGGACAAACCCAGGA
AAGCAGAGTCTGCCTGTCTCGGGCTATGCACCGGCTCTCAGTCTGAAATGTTTACCCGGT
TTACCAAATGGCTCAAAACCATACAGCTGTTTTTATGGCTCAAACCATAAAAACCACCGT
GATGGTTCATAGACAGCCACGCCCACCAAGAGACATTTCCCAAGTTGTCCAAATTCATAA
ACACGCTCGCCTGCAGGGAGATGGTCTGGAGCAGAGAGGAAAACTGGCGCCTTCTCTTTC
AAAGGCAATAATGGAATCGACTTTCAGTAACTGAATTTGTGCACAAAGCATTCTAAACAC
TAGTGACGCCTGTTTTGTTGAACTAATTCTGGCTCTGGAAATGTTTTTGTTTTATAGTTA
TTTACAGTTTTGTTTTGGGGTTTTTTGTTTTGGATTCAAGCTTAGTTTGTTAATATGTAT
AATTTAGCATCTATTGCACTCATGTAAATATGGAGTAAGTATTGTAAACTATTTCATTGC
TGGGGATTGTGGGTGTTATACATACATTTAGGACTGCAATTTTTTGGTATTTTTTGTATT
GTAAAATAACAGCTAATTTAAGCAGGAACAAGAGAATTAAGGGAGGTCTGTGCATTTTAA
AACACAAATGTGAAGAACTTGTATATAAACAAAAGTAAATACTATAATACAAACTTCCTT
CTGAAATAAAAGTAGATCTGATAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGTTATGCCCTGATACAGTGGTCACAAAGCCAAGAAAGGCATCCCCCTGTGCCCGTGT
GTCAAGCACACCTGGGACCAATCGGATAACTTTTAAAGCAGGACCATCTGTCAGTGCACG
TATGCAGGCGGTGTGGAAAGAGACGGTGGCAGCAGGAACATCTCTGTCCCCAGCATTGGC
TCTGCAAGTGCGTGGTGAATCTCCCAGTCGGCCTCTTGGTGCTGTGGGTTGCCAGGGAGG
ACCAATGTCACCCTGAGAAATGTTTCTCTTAGTCTTTAGATTCGAAGACTGTACCTATAG
ATAGCAGATTTTCCAAAAAGGGGTTTTCCAGGCTGCATTTTGTTGTGGTTTTTGTCTAAA
TTTTTAACAACCATTTCCCAGGACCATAGTTTACTGAAAACTGGGAGTGGGAGTGGGTGG
CCGCTTTGTTGTTAATCAGCTCCTGTTTCCCCATGGAGACCCTCACCCTTTCCTTCTGCC
CTTCCCCACACAGTTTGGGGAGAAGTCCATGCTTCCCTGTGAGGATCACCTCTAAATGTG
GGAGGAGATGGGGGGAGAAGGCAGCCCATGCTCCCCTGAGCTGACCTGGAGGAAAGCAGC
CCGGGACAAGGACTGCTGGCAAAAGGAAAATACGGCAGCATCTGTGGGTGAGGTCTGAGG
TGCGAGATTGGAGATGTCCCAGGAAATCTGGGGCAAATGGAAAGACACATTTTACCATTC
AGTGCAAATCTTGCTCCTTCGATGTAATAGAGTGTATTTAGAGAGGAGGTGGGAGCGAGT
CACTTCCTTGGGTGGTGGTATCATTTTCATGAACACCTTTGATCCTTAGGTTTCATCCAT
TCATTCAACAAATATTCACTAAGCACTTACTAACAACCTAAGCTAATGCTAGGGCAACGT
CCAAGGTGGAAGAACAGCTCTTCAGAATTACAGCAGAATTCAGCTCCTCAAACCTGTCAA
CCCAGGAGACCTTTCCTCGTGGTTTCTGTGAGAATTGGCCACCTGAGGACAAACCCAGGA
AAGCAGAGTCTGCCTGTCTCGGGCTATGCACCGGCTCTCAGTCTGAAATGTTTACCCGGT
TTACCAAATGGCTCAAAACCATACAGCTGTTTTTATGGCTCAAACCATAAAAACCACCGT
GATGGTTCATAGACAGCCACGCCCACCAAGAGACATTTCCCAAGTTGTCCAAATTCATAA
ACACGCTCGCCTGCAGGGAGATGGTCTGGAGCAGAGAGGAAAACTGGCGCCTTCTCTTTC
AAAGGCAATAATGGAATCGACTTTCAGTAACTGAATTTGTGCACAAAGCATTCTAAACAC
TAGTGACGCCTGTTTTGTTGAACTAATTCTGGCTCTGGAAATGTTTTTGTTTTATAGTTA
TTTACAGTTTTGTTTTGGGGTTTTTTGTTTTGGATTCAAGCTTAGTTTGTTAATATGTAT
AATTTAGCATCTATTGCACTCATGTAAATATGGAGTAAGTATTGTAAACTATTTCATTGC
TGGGGATTGTGGGTGTTATACATACATTTAGGACTGCAATTTTTTGGTATTTTTTGTATT
GTAAAATAACAGCTAATTTAAGCAGGAACAAGAGAATTAAGGGAGGTCTGTGCATTTTAA
AACACAAATGTGAAGAACTTGTATATAAACAAAAGTAAATACTATAATACAAACTTCCTT
CTGAAATAAAAGTAGATCTGATAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               493-609, - strand, RNAz p=0.864488
               

               
               924-1036, - strand, RNAz p=0.575083
               

               
               1308-1422, - strand, RNAz p=0.863833

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               493-609, - strand, RNAz p=0.864488
               

               
               924-1036, - strand, RNAz p=0.575083
               

               
               1308-1422, - strand, RNAz p=0.863833

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               11-706, gnl|bosTau2|chr13 (33636712-33637428)
               

               
               11-706, gnl|Hg17|chr20 (3578103-3578793)
               

               
               11-706, gnl|Mm7|chr2 (130769346-130770314)
               


               
               849-1103, gnl|bosTau2|chr13 (33637525-33637779)
               

               
               849-1103, gnl|Hg17|chr20 (3578951-3579214)
               


               
               1115-1707, gnl|bosTau2|chr13 (33637765-33638359)
               

               
               1115-1707, gnl|Hg17|chr20 (3579199-3579765)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-706, gnl|bosTau2|chr13 (33636712-33637428)
               

               
               11-706, gnl|Hg17|chr20 (3578103-3578793)
               

               
               11-706, gnl|Mm7|chr2 (130769346-130770314)
               


               
               849-1103, gnl|bosTau2|chr13 (33637525-33637779)
               

               
               849-1103, gnl|Hg17|chr20 (3578951-3579214)
               


               
               1115-1707, gnl|bosTau2|chr13 (33637765-33638359)
               

               
               1115-1707, gnl|Hg17|chr20 (3579199-3579765)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               cte (0.58548)
               

               
               liv (0.438853)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               liv (0.438853)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	493-609, - strand, RNAz p=0.864488
	924-1036, - strand, RNAz p=0.575083
	1308-1422, - strand, RNAz p=0.863833

	11-706, gnl\|bosTau2\|chr13 (33636712-33637428)
	11-706, gnl\|Hg17\|chr20 (3578103-3578793)
	11-706, gnl\|Mm7\|chr2 (130769346-130770314)

	849-1103, gnl\|bosTau2\|chr13 (33637525-33637779)
	849-1103, gnl\|Hg17\|chr20 (3578951-3579214)

	1115-1707, gnl\|bosTau2\|chr13 (33637765-33638359)
	1115-1707, gnl\|Hg17\|chr20 (3579199-3579765)

	cte (0.58548)
	liv (0.438853)
	cmu (0.372787)
	vin (0.332557)
	spl (0.286369)
	kid (0.259471)
	sug (0.254582)
	spc (0.226732)
	cty (0.20816)
	tes (0.207814)
	hea (0.204499)
	col (0.195008)
	duo (0.172801)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	cst (0.140036)
	ste (0.135208)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	ret (0.128733)
	cbr (0.127975)
	bla (0.124347)
	ebs (0.118301)
	jca (0.11396)