Ss1.1-Pig3-SRG8013O10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGAACCACTGGCCCCTCGGATTCCTAGGGTTTCCAGTTAAATTTTAAACTCCAAGTAA AGATCACAAATAACGTGTCATGAAGCTGGTCACTGTGTTCCTGCTGGTGACCATCGGCAT GTGCAGTTACTCTGCTATGGCCTTCCTCTTCAACCGTTTGCCCCTTCCTGTCGACAAGGC CTTACCTTTACCTCTGGACAACGTGCTCCCCTTCATGGACCCATTAAAGCTTCTTCTGAA AACTCTGGGCATTTCTGTTGAGCACCTGGTGGAAGGGCTGAAGAAGTGTGTGGATGAGCT GGGCCCAGAGGCCTCGGAGGCTGTGAAGAAACTGCTGGAGGCTCTCTCATACTTGGTGTG ACGCTGAATAAAGCAAGAGCCGAGGAGGGAGGGAGGGAGCTGACGTTTCCCTCCTCCTGG CCCCGTCCACCCTAACGTGCAGTGACCCCCGGAAGAATGAACAGAGCAATGAACCCACCT CAGCTTGTCCTGTGTTTATTTGGAGTCGGGGTGGGGGGGCTGTGTCCAGGGGGCCTCCCT CGATCACCTTTTCCCCGGGTCACAGGCTCTATATTGCCTGTTGTGACAGATACAGCTCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGAACCACTGGCCCCTCGGATTCCTAGGGTTTCCAGTTAAATTTTAAACTCCAAGTAA AGATCACAAATAACGTGTCATGAAGCTGGTCACTGTGTTCCTGCTGGTGACCATCGGCAT GTGCAGTTACTCTGCTATGGCCTTCCTCTTCAACCGTTTGCCCCTTCCTGTCGACAAGGC CTTACCTTTACCTCTGGACAACGTGCTCCCCTTCATGGACCCATTAAAGCTTCTTCTGAA AACTCTGGGCATTTCTGTTGAGCACCTGGTGGAAGGGCTGAAGAAGTGTGTGGATGAGCT GGGCCCAGAGGCCTCGGAGGCTGTGAAGAAACTGCTGGAGGCTCTCTCATACTTGGTGTG ACGCTGAATAAAGCAAGAGCCGAGGAGGGAGGGAGGGAGCTGACGTTTCCCTCCTCCTGG CCCCGTCCACCCTAACGTGCAGTGACCCCCGGAAGAATGAACAGAGCAATGAACCCACCT CAGCTTGTCCTGTGTTTATTTGGAGTCGGGGTGGGGGGGCTGTGTCCAGGGGGCCTCCCT CGATCACCTTTTCCCCGGGTCACAGGCTCTATATTGCCTGTTGTGACAGATACAGCTCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 219-338, + strand, RNAz p=0.583598 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 219-338, + strand, RNAz p=0.583598 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 2-137, gnl|bosTau2|chr7 (41148215-41148351) | |
| 2-137, gnl|canFam2|chr2 (44995905-44996117) | |
| 2-137, gnl|dasNov1|scaffold_122751 (757-972) | |
| 2-137, gnl|echTel1|scaffold_280173 (77831-78043) | |
| 2-137, gnl|hg17|chr5 (147238425-147238643) | |
| 2-137, gnl|Hg17|chr5 (147238484-147238617) | |
| 2-137, gnl|loxAfr1|scaffold_45597 (676-474) | |
| 2-137, gnl|mm7|chr18 (44141773-44141982) | |
| 2-137, gnl|Mm7|chr18 (44141828-44141963) | |
| 2-137, gnl|monDom2|scaffold_6 (19672927-19673147) | |
| 2-137, gnl|panTro1|chr4 (154130972-154131190) | |
| 2-137, gnl|rheMac2|chr6 (144318273-144318493) | |
| 2-137, gnl|rn3|chr18 (37235654-37235863) | |
| 206-338, gnl|bosTau2|chr7 (41151079-41151211) | |
| 206-338, gnl|canFam2|chr2 (44999485-44999670) | |
| 206-338, gnl|dasNov1|scaffold_122751 (3501-3688) | |
| 206-338, gnl|echTel1|scaffold_280173 (80561-80760) | |
| 206-338, gnl|hg17|chr5 (147241248-147241435) | |
| 206-338, gnl|Hg17|chr5 (147241273-147241405) | |
| 206-338, gnl|loxAfr1|scaffold_132966 (1040-847) | |
| 206-338, gnl|mm7|chr18 (44144234-44144416) | |
| 206-338, gnl|Mm7|chr18 (44144257-44144389) | |
| 206-338, gnl|monDom2|scaffold_6 (19674602-19674783) | |
| 206-338, gnl|oryCun1|scaffold_187985 (12069-12256) | |
| 206-338, gnl|panTro1|chr4 (154133790-154133977) | |
| 206-338, gnl|rheMac2|chr6 (144321423-144321610) | |
| 206-338, gnl|rn3|chr18 (37238087-37238271) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-137, gnl|bosTau2|chr7 (41148215-41148351) | |
| 2-137, gnl|canFam2|chr2 (44995905-44996117) | |
| 2-137, gnl|dasNov1|scaffold_122751 (757-972) | |
| 2-137, gnl|echTel1|scaffold_280173 (77831-78043) | |
| 2-137, gnl|hg17|chr5 (147238425-147238643) | |
| 2-137, gnl|Hg17|chr5 (147238484-147238617) | |
| 2-137, gnl|loxAfr1|scaffold_45597 (676-474) | |
| 2-137, gnl|mm7|chr18 (44141773-44141982) | |
| 2-137, gnl|Mm7|chr18 (44141828-44141963) | |
| 2-137, gnl|monDom2|scaffold_6 (19672927-19673147) | |
| 2-137, gnl|panTro1|chr4 (154130972-154131190) | |
| 2-137, gnl|rheMac2|chr6 (144318273-144318493) | |
| 2-137, gnl|rn3|chr18 (37235654-37235863) | |
| 206-338, gnl|bosTau2|chr7 (41151079-41151211) | |
| 206-338, gnl|canFam2|chr2 (44999485-44999670) | |
| 206-338, gnl|dasNov1|scaffold_122751 (3501-3688) | |
| 206-338, gnl|echTel1|scaffold_280173 (80561-80760) | |
| 206-338, gnl|hg17|chr5 (147241248-147241435) | |
| 206-338, gnl|Hg17|chr5 (147241273-147241405) | |
| 206-338, gnl|loxAfr1|scaffold_132966 (1040-847) | |
| 206-338, gnl|mm7|chr18 (44144234-44144416) | |
| 206-338, gnl|Mm7|chr18 (44144257-44144389) | |
| 206-338, gnl|monDom2|scaffold_6 (19674602-19674783) | |
| 206-338, gnl|oryCun1|scaffold_187985 (12069-12256) | |
| 206-338, gnl|panTro1|chr4 (154133790-154133977) | |
| 206-338, gnl|rheMac2|chr6 (144321423-144321610) | |
| 206-338, gnl|rn3|chr18 (37238087-37238271) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.575043) | |
| clu (0.119646) | |
| cty (0.10408) |