Non-Coding RNA Search

Ss1.1-Pig3-SRG8013O16.3

Sequence:


               
               GGCCCTCGCCCGGGAGTGCGTGTGTGCGCGCGTGTGTATGTGTGTGTGTGTGTGCGTGTG
CGCGAGTGTGTGTGCGGGGTGCGCGCGCGGGCGGGAGTGGGCGCGCGCGGGGAAAGGCCC
GAAAACACCTTATTTTGCACCGAGAGACCATTTGCAGCGGAACCCGAAAGTTTGCAAGAT
GAAGATAGCGCGCGGCGAACAAGCGGGCAAGGGGCAGCGGCAGCGGCGCCGCCAGGGACC
ATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCCACTCTCCCCTCGGA
CTCCGCGGTAAAGTAAACAGCCTCCAACTGCTGAACCTTGACAACCCAAATTAAGGAAGC
AGGAGAGATCAAACAGAACTGCTGCTGTGTTGTTGTCAGGAGGTCTACATGGAGAACCCT
GGACTATTCGATCAAGCAGCAAAGCTATATATTCACTAATGCAGAAATGGACCATTGCAA
ATGCTGATCTTTGTTGTGGAAGCAAAGGCTCACTTCGAAGGAAATACTCAGTCCCTCTTC
AGGCAGCATTTGGGTTCTTTATAGATGCTGAGTAGTGAAATAAGTTATTATTTTTATATG
CATTCTTATTTATGAAGAGAATGCACCCAGAAAGGCATTAAAAGGAAATGCAGTCTTCCA
GAGGCTGGCTGTCTTGCTACCCAGAACTGTGCACTGGAATTCTTTTTACCAACATGAGAC
TCCTACACTGGAGTTAGATAACGTTTTCTCACATCAAGTTTAGAAGATCTGCCTTGTCAG
GGAAGCCAAGGTTTTGTATGTGAGGGTTTAAATCTGATGTGAAGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCTCGCCCGGGAGTGCGTGTGTGCGCGCGTGTGTATGTGTGTGTGTGTGTGCGTGTG
CGCGAGTGTGTGTGCGGGGTGCGCGCGCGGGCGGGAGTGGGCGCGCGCGGGGAAAGGCCC
GAAAACACCTTATTTTGCACCGAGAGACCATTTGCAGCGGAACCCGAAAGTTTGCAAGAT
GAAGATAGCGCGCGGCGAACAAGCGGGCAAGGGGCAGCGGCAGCGGCGCCGCCAGGGACC
ATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCCACTCTCCCCTCGGA
CTCCGCGGTAAAGTAAACAGCCTCCAACTGCTGAACCTTGACAACCCAAATTAAGGAAGC
AGGAGAGATCAAACAGAACTGCTGCTGTGTTGTTGTCAGGAGGTCTACATGGAGAACCCT
GGACTATTCGATCAAGCAGCAAAGCTATATATTCACTAATGCAGAAATGGACCATTGCAA
ATGCTGATCTTTGTTGTGGAAGCAAAGGCTCACTTCGAAGGAAATACTCAGTCCCTCTTC
AGGCAGCATTTGGGTTCTTTATAGATGCTGAGTAGTGAAATAAGTTATTATTTTTATATG
CATTCTTATTTATGAAGAGAATGCACCCAGAAAGGCATTAAAAGGAAATGCAGTCTTCCA
GAGGCTGGCTGTCTTGCTACCCAGAACTGTGCACTGGAATTCTTTTTACCAACATGAGAC
TCCTACACTGGAGTTAGATAACGTTTTCTCACATCAAGTTTAGAAGATCTGCCTTGTCAG
GGAAGCCAAGGTTTTGTATGTGAGGGTTTAAATCTGATGTGAAGCTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-314, - strand, RNAz p=0.5982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-314, - strand, RNAz p=0.5982

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               157-314, gnl|bosTau2|chr22 (24104265-24104419)
               

               
               157-314, gnl|canFam2|chr20 (23442090-23442235)
               

               
               157-314, gnl|dasNov1|scaffold_66622 (8756-8901)
               

               
               157-314, gnl|echTel1|scaffold_301293 (2992-2843)
               

               
               157-314, gnl|Hg17|chr3 (71713542-71713384)
               

               
               157-314, gnl|hg17|chr9 (122609056-122609201)
               

               
               157-314, gnl|loxAfr1|scaffold_447 (165423-165278)
               

               
               157-314, gnl|oryCun1|scaffold_182191 (5837-5984)
               

               
               157-314, gnl|panTro1|chr11 (107318466-107318611)
               

               
               157-314, gnl|rheMac2|chr2 (64632865-64633014)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-314, gnl|bosTau2|chr22 (24104265-24104419)
               

               
               157-314, gnl|canFam2|chr20 (23442090-23442235)
               

               
               157-314, gnl|dasNov1|scaffold_66622 (8756-8901)
               

               
               157-314, gnl|echTel1|scaffold_301293 (2992-2843)
               

               
               157-314, gnl|Hg17|chr3 (71713542-71713384)
               

               
               157-314, gnl|hg17|chr9 (122609056-122609201)
               

               
               157-314, gnl|loxAfr1|scaffold_447 (165423-165278)
               

               
               157-314, gnl|oryCun1|scaffold_182191 (5837-5984)
               

               
               157-314, gnl|panTro1|chr11 (107318466-107318611)
               

               
               157-314, gnl|rheMac2|chr2 (64632865-64633014)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	157-314, gnl\|bosTau2\|chr22 (24104265-24104419)
	157-314, gnl\|canFam2\|chr20 (23442090-23442235)
	157-314, gnl\|dasNov1\|scaffold_66622 (8756-8901)
	157-314, gnl\|echTel1\|scaffold_301293 (2992-2843)
	157-314, gnl\|Hg17\|chr3 (71713542-71713384)
	157-314, gnl\|hg17\|chr9 (122609056-122609201)
	157-314, gnl\|loxAfr1\|scaffold_447 (165423-165278)
	157-314, gnl\|oryCun1\|scaffold_182191 (5837-5984)
	157-314, gnl\|panTro1\|chr11 (107318466-107318611)
	157-314, gnl\|rheMac2\|chr2 (64632865-64633014)