Non-Coding RNA Search

Ss1.1-Pig3-SRG8013O21.3

Sequence:


               
               TTGCCTTGCAGCTGTTCTTGGATTCTGTCTACTCAGAGCTCTTCTATAACCTCGCTGTGG
GTAGAAAAGTCTCCTCGCTTTAATGCTTCTCTTTTAAAAACAACTTGCATTCCCTTTGAA
ATGAAGCATTCCTGGATTACTTGTTAGTGCTGGTGTGTGAGGCTGAGTAGCCTTGGTGAC
TCTGTTCAGGTTGTAGAGTGACTAACGTTTTACCTTTTTTATGATAATTGAAAGGCATTT
CTGTCTGCTCCAATTTCGATTCTTTGGAAATATACTCAGTGCATCCTAGCAAAGAAGGCT
TTCTGTTCCACTGGCTCCTTATGAAGCAAAAATACGTTACCTTTTACACTTCGCTGACTG
GACAGGGTCTTCTCTCTCCCCTGTACCCCCTCCATCCAATTGAGGTAAAAGTCTGATACC
AAGAAAAACTTGGATCAAGCCTTCCTTGCTAGCCATGTCATAATAATGAGCCTATTTTCA
TGTGTTTTCCCTGCCTTTGGTTTTGTTTCTGATTTCATATCCCTTTGAGGTACAGTCCGA
TGAAATGCTGAATTCCAAGTGAGTTCCAGTGAGGAGCTGCCTTTCAGCTTCAGAAAATAT
GCATCTAAAACAAAACCAAATATTATGATCAGAAAGTCAACCTAGGTAAAATTATGGTTT
CCACCCCCAAATGAAACTGGAGATTTTGAATGTGGCTCAAAGAGTTAACATTTCTGTCCA
TGTGTCGTGTACACCAGGTGACACCCTCAGTAGGATTGACTACTAGCCTGTAAGTGTGTT
TTATCAAAGTGTGTAAGAATAAAAACTCACTTGCACGAGTTGAAAAGTACAGAAATGACA
CTTGTGAACGTGTGGACATTAACACTGTAGTTGATAGATCTTAAGCTGCTAATTGTTGAG
AGAGAATTACATTTGTTTTGTCTGGTTGCTGCAGATTCTCAGCAGCACTTTTACTGTACA
TACAAATTGAAATAAAGACCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCCTTGCAGCTGTTCTTGGATTCTGTCTACTCAGAGCTCTTCTATAACCTCGCTGTGG
GTAGAAAAGTCTCCTCGCTTTAATGCTTCTCTTTTAAAAACAACTTGCATTCCCTTTGAA
ATGAAGCATTCCTGGATTACTTGTTAGTGCTGGTGTGTGAGGCTGAGTAGCCTTGGTGAC
TCTGTTCAGGTTGTAGAGTGACTAACGTTTTACCTTTTTTATGATAATTGAAAGGCATTT
CTGTCTGCTCCAATTTCGATTCTTTGGAAATATACTCAGTGCATCCTAGCAAAGAAGGCT
TTCTGTTCCACTGGCTCCTTATGAAGCAAAAATACGTTACCTTTTACACTTCGCTGACTG
GACAGGGTCTTCTCTCTCCCCTGTACCCCCTCCATCCAATTGAGGTAAAAGTCTGATACC
AAGAAAAACTTGGATCAAGCCTTCCTTGCTAGCCATGTCATAATAATGAGCCTATTTTCA
TGTGTTTTCCCTGCCTTTGGTTTTGTTTCTGATTTCATATCCCTTTGAGGTACAGTCCGA
TGAAATGCTGAATTCCAAGTGAGTTCCAGTGAGGAGCTGCCTTTCAGCTTCAGAAAATAT
GCATCTAAAACAAAACCAAATATTATGATCAGAAAGTCAACCTAGGTAAAATTATGGTTT
CCACCCCCAAATGAAACTGGAGATTTTGAATGTGGCTCAAAGAGTTAACATTTCTGTCCA
TGTGTCGTGTACACCAGGTGACACCCTCAGTAGGATTGACTACTAGCCTGTAAGTGTGTT
TTATCAAAGTGTGTAAGAATAAAAACTCACTTGCACGAGTTGAAAAGTACAGAAATGACA
CTTGTGAACGTGTGGACATTAACACTGTAGTTGATAGATCTTAAGCTGCTAATTGTTGAG
AGAGAATTACATTTGTTTTGTCTGGTTGCTGCAGATTCTCAGCAGCACTTTTACTGTACA
TACAAATTGAAATAAAGACCTCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               534-642, - strand, RNAz p=0.594987
               

               
               754-873, + strand, RNAz p=0.683049

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               534-642, - strand, RNAz p=0.594987
               

               
               754-873, + strand, RNAz p=0.683049

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               831-904, + strand, RNAmicro p=0.971227

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               831-904, + strand, RNAmicro p=0.971227

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001017395, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001017395, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               55-984, gnl|bosTau2|chr8 (41000287-40999332)
               

               
               55-984, gnl|Hg17|chr3 (130850279-130849340)
               

               
               55-984, gnl|Mm7|chr6 (116045197-116044303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-984, gnl|bosTau2|chr8 (41000287-40999332)
               

               
               55-984, gnl|Hg17|chr3 (130850279-130849340)
               

               
               55-984, gnl|Mm7|chr6 (116045197-116044303)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pro (0.512033)
               

               
               ldo (0.291008)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               ldo (0.291008)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	534-642, - strand, RNAz p=0.594987
	754-873, + strand, RNAz p=0.683049

	55-984, gnl\|bosTau2\|chr8 (41000287-40999332)
	55-984, gnl\|Hg17\|chr3 (130850279-130849340)
	55-984, gnl\|Mm7\|chr6 (116045197-116044303)

	pro (0.512033)
	ldo (0.291008)
	liv (0.146284)
	hyp (0.142837)
	sug (0.127291)
	spc (0.113366)