Non-Coding RNA Search

Ss1.1-Pig3-SRG8013P09.5

Sequence:


               
               CAGCCTCGGGGGCCGAAGAGCCGACTCGGGTCGCGGGGGCAGCGGTTCTGGAGCCCGTGG
TGACCGCGGCGGGGAGCCGGCCGCGCAGGCGCCCAGCATGGACGGCTACAGGGTCCTCCG
AGAGATCGGGCAAGGCTCTTTCGGCAGAGCCCTCTTGGTTCAGCAGGAAGACAGCAATCG
GATGTTTGCCATGAAAGAAATAAGACTTCCCAAGTCTCATTCTGATACACAGAAATCTAG
GAAGGAGGCTGTTCTGTTGGCCAAAATGAAACACCCCAATATTGTTGCCTTTAAAGAGTC
ATTTGAAGCTGAAGGGCATCTGTATATTGTGATGGAATATTGCGATGGAGGGGACCTCAT
GCAGAAGATAAAACATCAGAAGGGAAAGTTGTTTCCTGAAGATATGATACTTAATTGGTT
TACACAGATGTGCCTTGGAGTAAATCACATTCACAAGAAACGTGTGTTACACCGAGATAT
CAAGTCCAAGAATATCTTCCTCACCCAAAATGGAAAAGTGAAACTGGGCGATTTTGGATC
TGCCCGTCTTCTCTCCAATCCCATGGCGTTTGCTTGTACATATGTGGGAACACCTTATTA
TGTGCCCCCGGAAATTTGGGAAAACTTGCCGTATAACAGTGAGGGCATGTTTAACATGAG
GAATTGATAGTTGGATAATAATTAGCTCATGGGATGTATATTTTCCTTTGGAAACAGGAT
GAAGAGGGAAACTGAATATTTAAAATTGTTTTGGTTAGTATGATAAGGTATATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTCGGGGGCCGAAGAGCCGACTCGGGTCGCGGGGGCAGCGGTTCTGGAGCCCGTGG
TGACCGCGGCGGGGAGCCGGCCGCGCAGGCGCCCAGCATGGACGGCTACAGGGTCCTCCG
AGAGATCGGGCAAGGCTCTTTCGGCAGAGCCCTCTTGGTTCAGCAGGAAGACAGCAATCG
GATGTTTGCCATGAAAGAAATAAGACTTCCCAAGTCTCATTCTGATACACAGAAATCTAG
GAAGGAGGCTGTTCTGTTGGCCAAAATGAAACACCCCAATATTGTTGCCTTTAAAGAGTC
ATTTGAAGCTGAAGGGCATCTGTATATTGTGATGGAATATTGCGATGGAGGGGACCTCAT
GCAGAAGATAAAACATCAGAAGGGAAAGTTGTTTCCTGAAGATATGATACTTAATTGGTT
TACACAGATGTGCCTTGGAGTAAATCACATTCACAAGAAACGTGTGTTACACCGAGATAT
CAAGTCCAAGAATATCTTCCTCACCCAAAATGGAAAAGTGAAACTGGGCGATTTTGGATC
TGCCCGTCTTCTCTCCAATCCCATGGCGTTTGCTTGTACATATGTGGGAACACCTTATTA
TGTGCCCCCGGAAATTTGGGAAAACTTGCCGTATAACAGTGAGGGCATGTTTAACATGAG
GAATTGATAGTTGGATAATAATTAGCTCATGGGATGTATATTTTCCTTTGGAAACAGGAT
GAAGAGGGAAACTGAATATTTAAAATTGTTTTGGTTAGTATGATAAGGTATATAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|405747|emb|CAA80921.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|405747|emb|CAA80921.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               51-214, gnl|bosTau2|chr12 (11340884-11340721)
               

               
               51-214, gnl|Hg17|chr13 (51628377-51628211)
               

               
               51-214, gnl|Mm7|chr8 (20945396-20945233)
               


               
               303-409, gnl|bosTau2|chr12 (11339660-11339554)
               

               
               303-409, gnl|Hg17|chr13 (51626134-51626028)
               

               
               303-409, gnl|Mm7|chr8 (20943204-20943098)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-214, gnl|bosTau2|chr12 (11340884-11340721)
               

               
               51-214, gnl|Hg17|chr13 (51628377-51628211)
               

               
               51-214, gnl|Mm7|chr8 (20945396-20945233)
               


               
               303-409, gnl|bosTau2|chr12 (11339660-11339554)
               

               
               303-409, gnl|Hg17|chr13 (51626134-51626028)
               

               
               303-409, gnl|Mm7|chr8 (20943204-20943098)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               ute (0.132784)

	51-214, gnl\|bosTau2\|chr12 (11340884-11340721)
	51-214, gnl\|Hg17\|chr13 (51628377-51628211)
	51-214, gnl\|Mm7\|chr8 (20945396-20945233)

	303-409, gnl\|bosTau2\|chr12 (11339660-11339554)
	303-409, gnl\|Hg17\|chr13 (51626134-51626028)
	303-409, gnl\|Mm7\|chr8 (20943204-20943098)