Non-Coding RNA Search

Ss1.1-Pig3-SRG8014B07.3

Sequence:


               
               GAGATGGCCAGGACGTTTGTTCCCTGAAACCCTCGACACCTCTGGAATCATTGGCTGGAC
ACAGTGCTTACGCGGAGGCGGAAGGGAGGGGGCTGGCCTCAGAGACAGCCTGCCTTTCCC
GACCGAAGGACAGACGTGCAATGCAGCCTGAGTGGGTGTGTGTGTGGTCTAGAAACATTT
CATTTTTTCTAACCAGCAGGATGAGAGTGAAACGAAGAGGAGCAGTTTCAACTCTGAAAG
CAAATCGCATCATCTCCGTAGCCACATGAGTTCATTCCCAGAAAGAAATTTTTGTAACCG
TGAATCGTGGTGTAGGTTTTGGTGGATTTTTTTTTTTTTTTTAACGTTTCGGGAAAATAA
CTTGTTGAATGCATTCTAATGTGGTCATCTCTAAAGCGTAAGTCGTGAAGGACGCCACTC
TGCCCCACTTTCTGCCAGTGAACGGTGGCTTCGATCACATCAGGTCTTGTCATGATGTCT
AAGATTGACGGCAACCCCGCATCGGGGGGAGAACTGGACGGCCGCCCTGGCCCCGACTGC
TCCGGTGCTGGGTTGGAGGAGGCCTCGGGCTGTGGAGAGAGAGGCCATGGAGCTGCCCGG
CGTGGCAGAGGGCCAGGCGCCACCGTCACCCCTGTCCCCCCGCCCTGCTTCAGCCAAAGC
CGTGCCCGTGGAATACGTTCTTGACTTTGCACCGTGGGGCAGAAGAGATCCACCGTCTGT
CTGTCACCTGACGGTTACAGTGCTTGCTGGTTTTTGTTTAAAGTAGAGCTGGAATTTGCG
GTGCTGATCTGGGGTCTGCAGTTACGTGGTAACTCATGTTGTCTTACCAACTCAGAGTTT
TGTCTGCAAACAAAAGAAAATCCACTTCTTAGAGAGGCTATATTTTTCTGCTACGAATTA
TTTTATATTTATAGCAAAACGAGGCTTTGATTGTCCAGGGGAGGTTATCTCCCTGAGAGG
CTCTATGGAGATTTGGGGTGGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATGGCCAGGACGTTTGTTCCCTGAAACCCTCGACACCTCTGGAATCATTGGCTGGAC
ACAGTGCTTACGCGGAGGCGGAAGGGAGGGGGCTGGCCTCAGAGACAGCCTGCCTTTCCC
GACCGAAGGACAGACGTGCAATGCAGCCTGAGTGGGTGTGTGTGTGGTCTAGAAACATTT
CATTTTTTCTAACCAGCAGGATGAGAGTGAAACGAAGAGGAGCAGTTTCAACTCTGAAAG
CAAATCGCATCATCTCCGTAGCCACATGAGTTCATTCCCAGAAAGAAATTTTTGTAACCG
TGAATCGTGGTGTAGGTTTTGGTGGATTTTTTTTTTTTTTTTAACGTTTCGGGAAAATAA
CTTGTTGAATGCATTCTAATGTGGTCATCTCTAAAGCGTAAGTCGTGAAGGACGCCACTC
TGCCCCACTTTCTGCCAGTGAACGGTGGCTTCGATCACATCAGGTCTTGTCATGATGTCT
AAGATTGACGGCAACCCCGCATCGGGGGGAGAACTGGACGGCCGCCCTGGCCCCGACTGC
TCCGGTGCTGGGTTGGAGGAGGCCTCGGGCTGTGGAGAGAGAGGCCATGGAGCTGCCCGG
CGTGGCAGAGGGCCAGGCGCCACCGTCACCCCTGTCCCCCCGCCCTGCTTCAGCCAAAGC
CGTGCCCGTGGAATACGTTCTTGACTTTGCACCGTGGGGCAGAAGAGATCCACCGTCTGT
CTGTCACCTGACGGTTACAGTGCTTGCTGGTTTTTGTTTAAAGTAGAGCTGGAATTTGCG
GTGCTGATCTGGGGTCTGCAGTTACGTGGTAACTCATGTTGTCTTACCAACTCAGAGTTT
TGTCTGCAAACAAAAGAAAATCCACTTCTTAGAGAGGCTATATTTTTCTGCTACGAATTA
TTTTATATTTATAGCAAAACGAGGCTTTGATTGTCCAGGGGAGGTTATCTCCCTGAGAGG
CTCTATGGAGATTTGGGGTGGTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               817-930, - strand, RNAz p=0.583052

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               817-930, - strand, RNAz p=0.583052

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-564, gnl|bosTau2|chr6 (58171241-58170673)
               

               
               1-564, gnl|Hg17|chr4 (88414147-88414747)
               

               
               1-564, gnl|Mm7|chr5 (103040242-103040786)
               


               
               629-930, gnl|bosTau2|chr6 (58170579-58170277)
               

               
               629-930, gnl|canFam2|chr32 (13587045-13588526)
               

               
               629-930, gnl|dasNov1|scaffold_19016 (15826-14406)
               

               
               629-930, gnl|echTel1|scaffold_310723 (54955-53714)
               

               
               629-930, gnl|hg17|chr4 (88414453-88415958)
               

               
               629-930, gnl|Hg17|chr4 (88414820-88415155)
               

               
               629-930, gnl|loxAfr1|scaffold_1433 (89618-91125)
               

               
               629-930, gnl|mm7|chr5 (103040516-103041848)
               

               
               629-930, gnl|monDom2|scaffold_37 (15869552-15868194)
               

               
               629-930, gnl|oryCun1|scaffold_207322 (46512-45151)
               

               
               629-930, gnl|panTro1|chr3 (104404884-104406379)
               

               
               629-930, gnl|rheMac2|chr5 (80089584-80091064)
               

               
               629-930, gnl|rn3|chr14 (7015642-7014309)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr6 (58171241-58170673)
               

               
               1-564, gnl|Hg17|chr4 (88414147-88414747)
               

               
               1-564, gnl|Mm7|chr5 (103040242-103040786)
               


               
               629-930, gnl|bosTau2|chr6 (58170579-58170277)
               

               
               629-930, gnl|canFam2|chr32 (13587045-13588526)
               

               
               629-930, gnl|dasNov1|scaffold_19016 (15826-14406)
               

               
               629-930, gnl|echTel1|scaffold_310723 (54955-53714)
               

               
               629-930, gnl|hg17|chr4 (88414453-88415958)
               

               
               629-930, gnl|Hg17|chr4 (88414820-88415155)
               

               
               629-930, gnl|loxAfr1|scaffold_1433 (89618-91125)
               

               
               629-930, gnl|mm7|chr5 (103040516-103041848)
               

               
               629-930, gnl|monDom2|scaffold_37 (15869552-15868194)
               

               
               629-930, gnl|oryCun1|scaffold_207322 (46512-45151)
               

               
               629-930, gnl|panTro1|chr3 (104404884-104406379)
               

               
               629-930, gnl|rheMac2|chr5 (80089584-80091064)
               

               
               629-930, gnl|rn3|chr14 (7015642-7014309)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

	1-564, gnl\|bosTau2\|chr6 (58171241-58170673)
	1-564, gnl\|Hg17\|chr4 (88414147-88414747)
	1-564, gnl\|Mm7\|chr5 (103040242-103040786)

	629-930, gnl\|bosTau2\|chr6 (58170579-58170277)
	629-930, gnl\|canFam2\|chr32 (13587045-13588526)
	629-930, gnl\|dasNov1\|scaffold_19016 (15826-14406)
	629-930, gnl\|echTel1\|scaffold_310723 (54955-53714)
	629-930, gnl\|hg17\|chr4 (88414453-88415958)
	629-930, gnl\|Hg17\|chr4 (88414820-88415155)
	629-930, gnl\|loxAfr1\|scaffold_1433 (89618-91125)
	629-930, gnl\|mm7\|chr5 (103040516-103041848)
	629-930, gnl\|monDom2\|scaffold_37 (15869552-15868194)
	629-930, gnl\|oryCun1\|scaffold_207322 (46512-45151)
	629-930, gnl\|panTro1\|chr3 (104404884-104406379)
	629-930, gnl\|rheMac2\|chr5 (80089584-80091064)
	629-930, gnl\|rn3\|chr14 (7015642-7014309)