Non-Coding RNA Search

Ss1.1-Pig3-SRG8014C01.5

Sequence:


               
               AGGCTTGGGGTTGGAGGGCGCGGTCTGCACTGTCTCAGGCTCACCTTCCACTTGGATCTC
AGATTGGTTCATGGCTCAGCGGCCATCTCTGGTGTTCAGCCTGAACAAAATAGGTTCCTT
GCTGGGAGGAGCTTGATGAAATCAAGATACACAATATGCTGGCTGCTGCTTTTGCCTTCC
CACCCCTGTAGGACTGAGTTCTGTCTGGTCAAGAAAAATCCGGAGTAAACTAGCTGAGCC
CATTGTAAAATGAAGGAGTGGATTTATTGAAGCATAAAACTATAGCCAGTAGCTTTTCTG
TCGCTTTGAAGGATCAGGATGTGTCACTGTTTTCTAACAAAGGAAGTCAAGTTGGATGGC
TGATAACTCCCACATGATTACTTGGTACTTGGGGCAGAGGGGCCATGTTAAAAACGGCTA
CGCTGTCTCTCAAAAGTCTGTTTCTTTGACGATGTGGGCACAGCTTGGGGCATTCTGAGG
TGATGCCCATCTGGCAAACTTTGGTTTATCTGTTCGTTAAGTCAGAGCTTGTACCCTGGC
TTCCAAAGCTGAGCCGGATGCCCAGGGGTGGGTACCACCTGGCTCCAGCCATCTCCTGGC
TTTGACTGTCCATTTGGAGTGGTTTGGGGGCCCCAGAGCCTTTGCTTCTCTTGGTGTGTC
CCTGACAGCAGACACAGCCTCATGCTGCCCTCAGTTTCCCCCCTTTATTTCCTTTGAAGG
ACCAATTTTTCATGGTACTTGTCCTGATTGTTTTCATAGTGTTCAAATCTGTATTTTTGT
ATGTAGAGGGAAATAATTTTCTCAGCGCTAATCACTAATAAATATTGTATTAAATTGTCA
TGAAGGAGTTCTTGTTTAATAAATGGACCTGTAAAAACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTTGGGGTTGGAGGGCGCGGTCTGCACTGTCTCAGGCTCACCTTCCACTTGGATCTC
AGATTGGTTCATGGCTCAGCGGCCATCTCTGGTGTTCAGCCTGAACAAAATAGGTTCCTT
GCTGGGAGGAGCTTGATGAAATCAAGATACACAATATGCTGGCTGCTGCTTTTGCCTTCC
CACCCCTGTAGGACTGAGTTCTGTCTGGTCAAGAAAAATCCGGAGTAAACTAGCTGAGCC
CATTGTAAAATGAAGGAGTGGATTTATTGAAGCATAAAACTATAGCCAGTAGCTTTTCTG
TCGCTTTGAAGGATCAGGATGTGTCACTGTTTTCTAACAAAGGAAGTCAAGTTGGATGGC
TGATAACTCCCACATGATTACTTGGTACTTGGGGCAGAGGGGCCATGTTAAAAACGGCTA
CGCTGTCTCTCAAAAGTCTGTTTCTTTGACGATGTGGGCACAGCTTGGGGCATTCTGAGG
TGATGCCCATCTGGCAAACTTTGGTTTATCTGTTCGTTAAGTCAGAGCTTGTACCCTGGC
TTCCAAAGCTGAGCCGGATGCCCAGGGGTGGGTACCACCTGGCTCCAGCCATCTCCTGGC
TTTGACTGTCCATTTGGAGTGGTTTGGGGGCCCCAGAGCCTTTGCTTCTCTTGGTGTGTC
CCTGACAGCAGACACAGCCTCATGCTGCCCTCAGTTTCCCCCCTTTATTTCCTTTGAAGG
ACCAATTTTTCATGGTACTTGTCCTGATTGTTTTCATAGTGTTCAAATCTGTATTTTTGT
ATGTAGAGGGAAATAATTTTCTCAGCGCTAATCACTAATAAATATTGTATTAAATTGTCA
TGAAGGAGTTCTTGTTTAATAAATGGACCTGTAAAAACAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-879, gnl|bosTau2|chr18 (29971666-29970818)
               

               
               7-879, gnl|Hg17|chr16 (65207062-65206153)
               

               
               7-879, gnl|Mm7|chr8 (102949642-102948706)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-879, gnl|bosTau2|chr18 (29971666-29970818)
               

               
               7-879, gnl|Hg17|chr16 (65207062-65206153)
               

               
               7-879, gnl|Mm7|chr8 (102949642-102948706)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fbs (0.350693)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

	7-879, gnl\|bosTau2\|chr18 (29971666-29970818)
	7-879, gnl\|Hg17\|chr16 (65207062-65206153)
	7-879, gnl\|Mm7\|chr8 (102949642-102948706)

	fbs (0.350693)
	duo (0.172801)
	hyp (0.142837)
	ute (0.132784)
	eje (0.0988338)