Ss1.1-Pig3-SRG8014C04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCGGCGGGGGAAGACTCCGCGGTGGTGCACGCGGAACCAAAGTCCGGAGGTCTCAGCC GGGCCATCATGGCTGTATTCCGATCGGGCCTCCTGGTGCTGACAACGCCGCTGGCCTCCC TGGTCCCTCGCCTGGCCCCCATCCTGACCTCGGCGGCCCGGCTTGTGAATCACACGCTCT ATGTACACCTGCAGCCCGGCATGAACCTGGGGGGCCCGGCTCAGCCCCAGTCTAGCCCCG TGCAGGCCACATTTGAAGTTATCGATTTCATCACGCACCTCTATGCTGGCGCCGATCTCC ACAGGCACCTGGACGTCAGAATTTTGCTGACCAATATCCGAACCAAGAGCTTTCTCCCTC CCCTGCCTAGCTCGGTCCAGAACCTGGCCCACCCACCGGAAGTAGTGCTGACTGACTTCC AGACCCTGGATGGAAGCCAGTACAACCCGGTCAAGCAACAGCTAGAGCGTTATGCCACCA GCTGTTACAGCTGTTGTCCGCAGCTGTCTTCGGTGCTGCTATACCCCGATTATGGGCCCG GAATGCTGCCTGTGCAGCCCCTAGATGTCCCTTTACCCTCCACCATCAGGCCGGCCTCCC TCTCCTCATAACTCTCCTGTCACAGGCCACTTCCCAGCTCAGCCCCTTCTGTAGGTGGCA ACCTGCCCTCTGGAGATAGGATGCACAAAGTGTTGCTCAGTGTGGCCTGCATCCTAGCCC AGGAGCAGCTTGTGGTGGGAGTGGCAGACAAAGACCTGTTGAAGAGCAAGTTGCTCCCTG AGCTGCTCCAACCCTACACAGAACGCGTGGAACATCTGAGTGAGTTCCTGGTGGACATCA AGCCCTCCTTGAGTTTTGATCTCATCCCCCTGCTGGACCCCTATGGGCCCGCTGGCTCTG ACCCCTCTCTGGAGTTCCTGGTGGTCAGCGAGGAGACCTATCGTGGGGGGATGGCCGTCA ACCGCTTCCGCCTTGAGAATGTAATAGAGGAGCTCACCTTGTACCAGATCCAGCTGCTGA AGGACCTAAACCCCAAGGAAAATGAAGAGGACAAAGTCAGCTCCTCCAGCTTCCGCCAAC AAATGCTGGGAAACCTGCTCCGGCCTCCACATAAGAGGCCAGAGCTCCCCCCAGGTTGCT ACGTGATCGGGCTGACAGGCATCAGTGGCTCTGGGAAGAGCTCAGTAGCTCAGCGGCTGA AGGGCCTGGGGGCGTATGTCATCGACAGTGACCAGCTGGGCCACCGGTCCTATGCCCCGG GCGGTCCTGCCTACCAGCCAGTTGTGGAAGCCTTTGGAACAGATATTCTCCATAAAGACG GCACCATCAACAGGAAGGTCCTAGGCAGCCGGGTGTTTGGGAACAAGAAGCAGCTGAAGA TACTCACGGACATTGTGTGGCCAGTTATCGCAAAGCTGGCCAGAGAGGAGGTGGATCAGG CCGTGGCTGAGGGAAAGCGTGTGTGCGTGATCGATGCTGCCGTGCTGCTTGAAGCCGGCT GGCAGAACATGGTGCACGAGGTGTGGACTGTTGTCATCCCCGAGACTGAGGCTGTACGAC GCATCGTGGAGAGGGATGGCCTGAGCGAGGCTGCGGCTCAAAGCCGGCTGCAGAGCCAGA TGAGTGGGCAGCAGCTTGTGGACCAGAGCCACGTGGTGCTCAGCACCTTGTGGGAGCCAC ATGTCACCCAGCGCCAGGTGGAGAAAGCCTGGGCCCTCCTGCAGAAGCGCATCTCTGAGG CTCCATCAGACCCATGACTGACGGGTCAGAGGAGATCCAGGGGTGACTAGAGGAGATCCA GCAGTGAGGAGGAGTCAGGACCTTGAAGCTCACCCTAGTTTGGGCCTAGAAGGCTCTCAG CTAAGCTGGGTGGGGCAGAAATGGGCCTGCTCGACTGAAGAAGCCTAACCAGCTTGCTGG TGTTTGGCCAACACTGAGAGTGCGGCTCATGGGGGGAGCTGGTCCTCGGCACTGCATTCC CACGCTTGCCCAAAGGTCTGGGTACCCATGGCACGCCAGGGCCAAGGCCAACACTGGGAC TTGTAACAGAATTAAAGGTGAATGTTACCAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCGGCGGGGGAAGACTCCGCGGTGGTGCACGCGGAACCAAAGTCCGGAGGTCTCAGCC GGGCCATCATGGCTGTATTCCGATCGGGCCTCCTGGTGCTGACAACGCCGCTGGCCTCCC TGGTCCCTCGCCTGGCCCCCATCCTGACCTCGGCGGCCCGGCTTGTGAATCACACGCTCT ATGTACACCTGCAGCCCGGCATGAACCTGGGGGGCCCGGCTCAGCCCCAGTCTAGCCCCG TGCAGGCCACATTTGAAGTTATCGATTTCATCACGCACCTCTATGCTGGCGCCGATCTCC ACAGGCACCTGGACGTCAGAATTTTGCTGACCAATATCCGAACCAAGAGCTTTCTCCCTC CCCTGCCTAGCTCGGTCCAGAACCTGGCCCACCCACCGGAAGTAGTGCTGACTGACTTCC AGACCCTGGATGGAAGCCAGTACAACCCGGTCAAGCAACAGCTAGAGCGTTATGCCACCA GCTGTTACAGCTGTTGTCCGCAGCTGTCTTCGGTGCTGCTATACCCCGATTATGGGCCCG GAATGCTGCCTGTGCAGCCCCTAGATGTCCCTTTACCCTCCACCATCAGGCCGGCCTCCC TCTCCTCATAACTCTCCTGTCACAGGCCACTTCCCAGCTCAGCCCCTTCTGTAGGTGGCA ACCTGCCCTCTGGAGATAGGATGCACAAAGTGTTGCTCAGTGTGGCCTGCATCCTAGCCC AGGAGCAGCTTGTGGTGGGAGTGGCAGACAAAGACCTGTTGAAGAGCAAGTTGCTCCCTG AGCTGCTCCAACCCTACACAGAACGCGTGGAACATCTGAGTGAGTTCCTGGTGGACATCA AGCCCTCCTTGAGTTTTGATCTCATCCCCCTGCTGGACCCCTATGGGCCCGCTGGCTCTG ACCCCTCTCTGGAGTTCCTGGTGGTCAGCGAGGAGACCTATCGTGGGGGGATGGCCGTCA ACCGCTTCCGCCTTGAGAATGTAATAGAGGAGCTCACCTTGTACCAGATCCAGCTGCTGA AGGACCTAAACCCCAAGGAAAATGAAGAGGACAAAGTCAGCTCCTCCAGCTTCCGCCAAC AAATGCTGGGAAACCTGCTCCGGCCTCCACATAAGAGGCCAGAGCTCCCCCCAGGTTGCT ACGTGATCGGGCTGACAGGCATCAGTGGCTCTGGGAAGAGCTCAGTAGCTCAGCGGCTGA AGGGCCTGGGGGCGTATGTCATCGACAGTGACCAGCTGGGCCACCGGTCCTATGCCCCGG GCGGTCCTGCCTACCAGCCAGTTGTGGAAGCCTTTGGAACAGATATTCTCCATAAAGACG GCACCATCAACAGGAAGGTCCTAGGCAGCCGGGTGTTTGGGAACAAGAAGCAGCTGAAGA TACTCACGGACATTGTGTGGCCAGTTATCGCAAAGCTGGCCAGAGAGGAGGTGGATCAGG CCGTGGCTGAGGGAAAGCGTGTGTGCGTGATCGATGCTGCCGTGCTGCTTGAAGCCGGCT GGCAGAACATGGTGCACGAGGTGTGGACTGTTGTCATCCCCGAGACTGAGGCTGTACGAC GCATCGTGGAGAGGGATGGCCTGAGCGAGGCTGCGGCTCAAAGCCGGCTGCAGAGCCAGA TGAGTGGGCAGCAGCTTGTGGACCAGAGCCACGTGGTGCTCAGCACCTTGTGGGAGCCAC ATGTCACCCAGCGCCAGGTGGAGAAAGCCTGGGCCCTCCTGCAGAAGCGCATCTCTGAGG CTCCATCAGACCCATGACTGACGGGTCAGAGGAGATCCAGGGGTGACTAGAGGAGATCCA GCAGTGAGGAGGAGTCAGGACCTTGAAGCTCACCCTAGTTTGGGCCTAGAAGGCTCTCAG CTAAGCTGGGTGGGGCAGAAATGGGCCTGCTCGACTGAAGAAGCCTAACCAGCTTGCTGG TGTTTGGCCAACACTGAGAGTGCGGCTCATGGGGGGAGCTGGTCCTCGGCACTGCATTCC CACGCTTGCCCAAAGGTCTGGGTACCCATGGCACGCCAGGGCCAAGGCCAACACTGGGAC TTGTAACAGAATTAAAGGTGAATGTTACCAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 217-1952, + strand, RNAz p=0.967221 | |
| 1152-1271, + strand, RNAz p=0.530436 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 217-1952, + strand, RNAz p=0.967221 | |
| 1152-1271, + strand, RNAz p=0.530436 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 58-771, gnl|bosTau2|chr19 (38820750-38820037) | |
| 58-771, gnl|Hg17|chr17 (37968156-37968872) | |
| 58-771, gnl|Mm7|chr11 (101192038-101192751) | |
| 1113-1305, gnl|bosTau2|chr19 (38818742-38818550) | |
| 1113-1305, gnl|canFam2|chr9 (23715361-23715157) | |
| 1113-1305, gnl|danRer3|chr18 (53638-53444) | |
| 1113-1305, gnl|dasNov1|scaffold_64993 (43191-43395) | |
| 1113-1305, gnl|fr1|chrUn (62905766-62905561) | |
| 1113-1305, gnl|galGal2|chrUn (87179155-87178948) | |
| 1113-1305, gnl|hg17|chr17 (37970247-37970451) | |
| 1113-1305, gnl|Hg17|chr17 (37970253-37970445) | |
| 1113-1305, gnl|loxAfr1|scaffold_23054 (21755-21551) | |
| 1113-1305, gnl|mm7|chr11 (101194041-101194245) | |
| 1113-1305, gnl|Mm7|chr11 (101194047-101194239) | |
| 1113-1305, gnl|monDom2|scaffold_18 (53018565-53018790) | |
| 1113-1305, gnl|oryCun1|scaffold_176127 (41441-41645) | |
| 1113-1305, gnl|panTro1|chr19 (41172898-41173102) | |
| 1113-1305, gnl|rheMac2|chr16 (52686925-52687129) | |
| 1113-1305, gnl|rn3|chr10 (90116231-90116435) | |
| 1113-1305, gnl|tetNig1|chr2_random (544354-544555) | |
| 1113-1305, gnl|xenTro1|scaffold_1157 (266122-265923) | |
| 1687-2070, gnl|bosTau2|chr19 (38817551-38817158) | |
| 1687-2070, gnl|Hg17|chr17 (37971439-37971832) | |
| 1687-2070, gnl|Mm7|chr11 (101195276-101195663) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 58-771, gnl|bosTau2|chr19 (38820750-38820037) | |
| 58-771, gnl|Hg17|chr17 (37968156-37968872) | |
| 58-771, gnl|Mm7|chr11 (101192038-101192751) | |
| 1113-1305, gnl|bosTau2|chr19 (38818742-38818550) | |
| 1113-1305, gnl|canFam2|chr9 (23715361-23715157) | |
| 1113-1305, gnl|danRer3|chr18 (53638-53444) | |
| 1113-1305, gnl|dasNov1|scaffold_64993 (43191-43395) | |
| 1113-1305, gnl|fr1|chrUn (62905766-62905561) | |
| 1113-1305, gnl|galGal2|chrUn (87179155-87178948) | |
| 1113-1305, gnl|hg17|chr17 (37970247-37970451) | |
| 1113-1305, gnl|Hg17|chr17 (37970253-37970445) | |
| 1113-1305, gnl|loxAfr1|scaffold_23054 (21755-21551) | |
| 1113-1305, gnl|mm7|chr11 (101194041-101194245) | |
| 1113-1305, gnl|Mm7|chr11 (101194047-101194239) | |
| 1113-1305, gnl|monDom2|scaffold_18 (53018565-53018790) | |
| 1113-1305, gnl|oryCun1|scaffold_176127 (41441-41645) | |
| 1113-1305, gnl|panTro1|chr19 (41172898-41173102) | |
| 1113-1305, gnl|rheMac2|chr16 (52686925-52687129) | |
| 1113-1305, gnl|rn3|chr10 (90116231-90116435) | |
| 1113-1305, gnl|tetNig1|chr2_random (544354-544555) | |
| 1113-1305, gnl|xenTro1|scaffold_1157 (266122-265923) | |
| 1687-2070, gnl|bosTau2|chr19 (38817551-38817158) | |
| 1687-2070, gnl|Hg17|chr17 (37971439-37971832) | |
| 1687-2070, gnl|Mm7|chr11 (101195276-101195663) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| mcp (0.511945) | |
| nca (0.410621) | |
| elu (0.385356) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cly (0.120642) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.511945) | |
| nca (0.410621) | |
| elu (0.385356) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cly (0.120642) | |
| jca (0.11396) | |
| cty (0.10408) |