Ss1.1-Pig3-SRG8014C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTCCCAGCCTGCCCCAAATGGTGCCAAATGCATTCCAATACGAGACCGTGGCTTCCTA GTGCAGACGATTGAGTTTGCTGAACAGCGGATCCCTGTGTTGAATGAATACTGTGTGGTT TGTGATGAGCCACATGTGTTTCAAAATGGCCCAATGCTTAGGCCTACTGTGTGTGAACGA GAGCTGTGTGTATTTGCTTTTCAAACCCTGGGAGTAATGAATGAAGCTGCTGATGAAATA GCAACTGGAGCTCAGGTGGTAGACCTACTAGTATCCATGTGTAGGTCTGCATTGGAATCT CCTAGAAAAGTTGTCATTTTCGAGCCATATCCTTCTGTGGTAGATCCTAACGACCCTCAG ATGCTGGCCTTCAACCCCAGGAAAAAGAACTATGATCGAGTAATGAAAGCTTTGGATAGC ATAACTTCTATTAGAGAAATGACACAAGCACCATATCTGGAAATCAAGAAGCAGATGGAT AAACAAGATCCCCTTGCTCATCCCTTACTGCAATGGGTTATTTCAAGTAATAGGTCACAT ATTGTGAAACTGCCAGTTAACAGGCAACTGAAGTTCATGCACACTCCCCATCAGTTCCTT CTTCTTAGCAGTCCACCAGCCAAAGAATCCAATTTTAGAGCTGCTAAAAAACTCTTTGGA AGCACCTTTGCATTTCATGGCTCACACATTGAAAACTGGCACTCCATCCTGAGGAATGGT CTGGTTGTTGCTTCTAATACACGACTGCAGCTCCACGGTGCAATGTATGGGAGTGGGATC TATCTTAGTCCAATGTCAAGCATATCATTTGGTTACTCAGGGATGAACAAGAAGCAGAAG GTGTCAGCCAAGGATGAGCCGGCTTCAAGCAGTAAAAACAGCAATGCGTCACAGTCACAG AAAAAAGGACAGCAGTCGCAGTTCCTGCAAAGCCGTAACTTAAAATGCATAGCCTTATGT GAAGTGATCACCTCACCTGACCTGCACAAACATGGAGAGATATGGGTTGTCCCAAATACT GATCATGTCTGCACACGATTCTTTTTCGTCTATGAAGATGGCCAAGTGGGAGACACAAAT ATTAACACACAAGAAGGAGGCATTCACAAAGAGATCCTTCGAGTAATTGGTAATCAAACT GCTACTGGTTAAAGGACCACCATTTAATTAACATGATTTGAAAGCCTTCCTCGGGTTCAA AGCTGGATTTTGAACTGAAGAAGATGATAAAATAATTTATTGTTATTATAAACAAAATTA ACCCTTTGAATACTGATTTTTTTCTTAGTATTTCTAAGTATCTCATTAAATGCCTAAAAT GGTATAAAATTTACCAATTGTAGGGTTATGGAATCTAGTAATAAAATTACAACAGCACTT AAACTGAAGTTTGGGTTGCTCACACAATAAACAGATTGAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTCCCAGCCTGCCCCAAATGGTGCCAAATGCATTCCAATACGAGACCGTGGCTTCCTA GTGCAGACGATTGAGTTTGCTGAACAGCGGATCCCTGTGTTGAATGAATACTGTGTGGTT TGTGATGAGCCACATGTGTTTCAAAATGGCCCAATGCTTAGGCCTACTGTGTGTGAACGA GAGCTGTGTGTATTTGCTTTTCAAACCCTGGGAGTAATGAATGAAGCTGCTGATGAAATA GCAACTGGAGCTCAGGTGGTAGACCTACTAGTATCCATGTGTAGGTCTGCATTGGAATCT CCTAGAAAAGTTGTCATTTTCGAGCCATATCCTTCTGTGGTAGATCCTAACGACCCTCAG ATGCTGGCCTTCAACCCCAGGAAAAAGAACTATGATCGAGTAATGAAAGCTTTGGATAGC ATAACTTCTATTAGAGAAATGACACAAGCACCATATCTGGAAATCAAGAAGCAGATGGAT AAACAAGATCCCCTTGCTCATCCCTTACTGCAATGGGTTATTTCAAGTAATAGGTCACAT ATTGTGAAACTGCCAGTTAACAGGCAACTGAAGTTCATGCACACTCCCCATCAGTTCCTT CTTCTTAGCAGTCCACCAGCCAAAGAATCCAATTTTAGAGCTGCTAAAAAACTCTTTGGA AGCACCTTTGCATTTCATGGCTCACACATTGAAAACTGGCACTCCATCCTGAGGAATGGT CTGGTTGTTGCTTCTAATACACGACTGCAGCTCCACGGTGCAATGTATGGGAGTGGGATC TATCTTAGTCCAATGTCAAGCATATCATTTGGTTACTCAGGGATGAACAAGAAGCAGAAG GTGTCAGCCAAGGATGAGCCGGCTTCAAGCAGTAAAAACAGCAATGCGTCACAGTCACAG AAAAAAGGACAGCAGTCGCAGTTCCTGCAAAGCCGTAACTTAAAATGCATAGCCTTATGT GAAGTGATCACCTCACCTGACCTGCACAAACATGGAGAGATATGGGTTGTCCCAAATACT GATCATGTCTGCACACGATTCTTTTTCGTCTATGAAGATGGCCAAGTGGGAGACACAAAT ATTAACACACAAGAAGGAGGCATTCACAAAGAGATCCTTCGAGTAATTGGTAATCAAACT GCTACTGGTTAAAGGACCACCATTTAATTAACATGATTTGAAAGCCTTCCTCGGGTTCAA AGCTGGATTTTGAACTGAAGAAGATGATAAAATAATTTATTGTTATTATAAACAAAATTA ACCCTTTGAATACTGATTTTTTTCTTAGTATTTCTAAGTATCTCATTAAATGCCTAAAAT GGTATAAAATTTACCAATTGTAGGGTTATGGAATCTAGTAATAAAATTACAACAGCACTT AAACTGAAGTTTGGGTTGCTCACACAATAAACAGATTGAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1123-1281, + strand, RNAz p=0.908054 | |
| 1308-1424, - strand, RNAz p=0.810551 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1123-1281, + strand, RNAz p=0.908054 | |
| 1308-1424, - strand, RNAz p=0.810551 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AL834477, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 254-381, gnl|bosTau2|chr20 (17482476-17482603) | |
| 254-381, gnl|canFam2|chr4 (67336410-67336262) | |
| 254-381, gnl|danRer3|chr19 (15847359-15847490) | |
| 254-381, gnl|echTel1|scaffold_314351 (35295-35443) | |
| 254-381, gnl|fr1|chrUn (204727545-204727679) | |
| 254-381, gnl|galGal2|chrZ (7869684-7869832) | |
| 254-381, gnl|hg17|chr5 (50152799-50152947) | |
| 254-381, gnl|Hg17|chr5 (50152802-50152929) | |
| 254-381, gnl|loxAfr1|scaffold_80430 (5146-4998) | |
| 254-381, gnl|mm7|chr13 (114085958-114085811) | |
| 254-381, gnl|Mm7|chr13 (114085953-114085826) | |
| 254-381, gnl|monDom2|scaffold_27 (12369589-12369735) | |
| 254-381, gnl|oryCun1|scaffold_199068 (143998-144145) | |
| 254-381, gnl|panTro1|chr4 (66156077-66155929) | |
| 254-381, gnl|rheMac2|chr6 (48373832-48373980) | |
| 254-381, gnl|rn3|chr2 (48621277-48621128) | |
| 254-381, gnl|tetNig1|chr5 (1426657-1426525) | |
| 254-381, gnl|xenTro1|scaffold_58 (2089449-2089296) | |
| 564-677, gnl|bosTau2|chr20 (17489202-17489315) | |
| 564-677, gnl|Hg17|chr5 (50159534-50159647) | |
| 564-677, gnl|Mm7|chr13 (114076888-114076775) | |
| 1043-1424, gnl|bosTau2|chr20 (17507903-17508282) | |
| 1043-1424, gnl|Hg17|chr5 (50173551-50173932) | |
| 1043-1424, gnl|Mm7|chr13 (114063633-114063248) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 254-381, gnl|bosTau2|chr20 (17482476-17482603) | |
| 254-381, gnl|canFam2|chr4 (67336410-67336262) | |
| 254-381, gnl|danRer3|chr19 (15847359-15847490) | |
| 254-381, gnl|echTel1|scaffold_314351 (35295-35443) | |
| 254-381, gnl|fr1|chrUn (204727545-204727679) | |
| 254-381, gnl|galGal2|chrZ (7869684-7869832) | |
| 254-381, gnl|hg17|chr5 (50152799-50152947) | |
| 254-381, gnl|Hg17|chr5 (50152802-50152929) | |
| 254-381, gnl|loxAfr1|scaffold_80430 (5146-4998) | |
| 254-381, gnl|mm7|chr13 (114085958-114085811) | |
| 254-381, gnl|Mm7|chr13 (114085953-114085826) | |
| 254-381, gnl|monDom2|scaffold_27 (12369589-12369735) | |
| 254-381, gnl|oryCun1|scaffold_199068 (143998-144145) | |
| 254-381, gnl|panTro1|chr4 (66156077-66155929) | |
| 254-381, gnl|rheMac2|chr6 (48373832-48373980) | |
| 254-381, gnl|rn3|chr2 (48621277-48621128) | |
| 254-381, gnl|tetNig1|chr5 (1426657-1426525) | |
| 254-381, gnl|xenTro1|scaffold_58 (2089449-2089296) | |
| 564-677, gnl|bosTau2|chr20 (17489202-17489315) | |
| 564-677, gnl|Hg17|chr5 (50159534-50159647) | |
| 564-677, gnl|Mm7|chr13 (114076888-114076775) | |
| 1043-1424, gnl|bosTau2|chr20 (17507903-17508282) | |
| 1043-1424, gnl|Hg17|chr5 (50173551-50173932) | |
| 1043-1424, gnl|Mm7|chr13 (114063633-114063248) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| thg (0.887536) | |
| kid (0.259471) | |
| aor (0.195274) | |
| gul (0.177588) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| sug (0.127291) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.887536) | |
| kid (0.259471) | |
| aor (0.195274) | |
| gul (0.177588) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| sug (0.127291) | |
| spc (0.113366) | |
| nbm (0.0993246) |