Non-Coding RNA Search

Ss1.1-Pig3-SRG8014C08.3

Sequence:


               
               TCCTGTATTGGTCCCCTTTGTAAGTTTCCAGTCTTGGGTGATGGTTAACTCCGTAACTCA
GAATTCAGATTAACCCAAATTAAGGCAGGTCAAGGGACTGTAATGATACTTAGTGTTACT
AAAAGCTGTTCCAAAGAGCTGCTGCCTAAGAAGAATTCATTAACCTAAAGCAACAATATT
TTACTATTATTTCTAGATAATATGAATGCTCTTTCCAGAGAAAGTCTAGTGCCAAATTTG
TCATGACTTAGTAGATAAAAGAACCATTTAGGAACAGCTTTTCTTCTATTTTATGTCCTT
TAAAAGTCGCTAACACAGTGGCAGTGTTAGATGAAGAGGCTGTCTACAAGGTAGATAATA
TATTGTTTGATACTCAAAACACATTTCATTTTGCTTAAGTAGAAAGTAAATAATTGTATA
TTTTAAGAGTCTTTAAGAAGGGTTAAACACATTTTATAAGGTCAAGATGTAAATGATTCA
AGTTTAGAGCTCTAATATTTGACTTTTTAAAATGACATTCTTCCTAGTGGATTTCTCTTG
CTGTACGCTGGATGACACCGTGATTCTAGTAAGATTCACTGTTGACATAGTACAAGTTAC
ATAGCTTAACAATACATTGACATGTAATTTGGAAAATTAACGAAGTTAAATCTTTTCTAG
TATGTAATATCAAAAGGGAAGCAACCATAAATGGGGAAGTGTATCCGTTGCTCTTAGGGC
CATTTTTGTATAAATATTTAAATAAACACATTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGTATTGGTCCCCTTTGTAAGTTTCCAGTCTTGGGTGATGGTTAACTCCGTAACTCA
GAATTCAGATTAACCCAAATTAAGGCAGGTCAAGGGACTGTAATGATACTTAGTGTTACT
AAAAGCTGTTCCAAAGAGCTGCTGCCTAAGAAGAATTCATTAACCTAAAGCAACAATATT
TTACTATTATTTCTAGATAATATGAATGCTCTTTCCAGAGAAAGTCTAGTGCCAAATTTG
TCATGACTTAGTAGATAAAAGAACCATTTAGGAACAGCTTTTCTTCTATTTTATGTCCTT
TAAAAGTCGCTAACACAGTGGCAGTGTTAGATGAAGAGGCTGTCTACAAGGTAGATAATA
TATTGTTTGATACTCAAAACACATTTCATTTTGCTTAAGTAGAAAGTAAATAATTGTATA
TTTTAAGAGTCTTTAAGAAGGGTTAAACACATTTTATAAGGTCAAGATGTAAATGATTCA
AGTTTAGAGCTCTAATATTTGACTTTTTAAAATGACATTCTTCCTAGTGGATTTCTCTTG
CTGTACGCTGGATGACACCGTGATTCTAGTAAGATTCACTGTTGACATAGTACAAGTTAC
ATAGCTTAACAATACATTGACATGTAATTTGGAAAATTAACGAAGTTAAATCTTTTCTAG
TATGTAATATCAAAAGGGAAGCAACCATAAATGGGGAAGTGTATCCGTTGCTCTTAGGGC
CATTTTTGTATAAATATTTAAATAAACACATTCATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               235-347, - strand, RNAz p=0.925968

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-347, - strand, RNAz p=0.925968

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-756, gnl|bosTau2|chr18 (36301473-36300722)
               

               
               6-756, gnl|Hg17|chr19 (38162406-38161345)
               

               
               6-756, gnl|Mm7|chr7 (32284496-32285301)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-756, gnl|bosTau2|chr18 (36301473-36300722)
               

               
               6-756, gnl|Hg17|chr19 (38162406-38161345)
               

               
               6-756, gnl|Mm7|chr7 (32284496-32285301)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               lin (0.873617)
               

               
               ret (0.3862)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.873617)
               

               
               ret (0.3862)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

	6-756, gnl\|bosTau2\|chr18 (36301473-36300722)
	6-756, gnl\|Hg17\|chr19 (38162406-38161345)
	6-756, gnl\|Mm7\|chr7 (32284496-32285301)

	lin (0.873617)
	ret (0.3862)
	mgm (0.360685)
	rec (0.346141)
	tra (0.246184)
	mgp (0.230681)
	sag (0.182715)
	mcp (0.170648)
	fco (0.157208)
	lyg (0.133103)
	ova (0.129132)
	spc (0.113366)