Non-Coding RNA Search

Ss1.1-Pig3-SRG8014D02.5

Sequence:


               
               CCAGTCGGGTTTATCAAATAGTAGTCAAAATTGTAGTAACAAGACAAGTGTAGGAAAGAC
TCAGAGACGGTCAGGAGGAAGCAAAACTGGAGGAAAAGAGAAAGAAACTTCAGGGGAGTC
TTGCAAAGATCACTTTGCTCGAAAACAAACTCAGAGAGCCCAAAGTGAGAATCTCGAGCT
TCTCTCCTTGAAGAGACTTACATTAACAACCAGCCAGTCCCTGCCTAAACCTAGTAGCCA
TGGTTTGGCTAAAACCGCCGCGACTGTATTTAGTAAGTCCTTTGAACAAGTCAGTGGTGT
CACAGTCCCACATAACCCATCTTCTGCTGTTGGCTGTGGGGCTGGGGCAGATTCCAATAG
GTTTTCTGCTTGTAGTCTCCAAGAAGAAAAGCTTATTTACGTTTCTGAAAGGACTGAACT
TCCAATGAAGCATCAAGCAGGTCATCAGAGACCTCCTAGTATTAGCATTACTCTGTCCAC
AGATTAATTTGTAATCGTTTTCTCATGTAACCAGTGAATCTGGAAATATGACTTTGCTTC
TTTATCAAAGTGCCCAGGGTCTTTCATCCCTGTTCCTGACAAGAGCACTGCTGTCTTAAA
TTCTGCTACCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTCGGGTTTATCAAATAGTAGTCAAAATTGTAGTAACAAGACAAGTGTAGGAAAGAC
TCAGAGACGGTCAGGAGGAAGCAAAACTGGAGGAAAAGAGAAAGAAACTTCAGGGGAGTC
TTGCAAAGATCACTTTGCTCGAAAACAAACTCAGAGAGCCCAAAGTGAGAATCTCGAGCT
TCTCTCCTTGAAGAGACTTACATTAACAACCAGCCAGTCCCTGCCTAAACCTAGTAGCCA
TGGTTTGGCTAAAACCGCCGCGACTGTATTTAGTAAGTCCTTTGAACAAGTCAGTGGTGT
CACAGTCCCACATAACCCATCTTCTGCTGTTGGCTGTGGGGCTGGGGCAGATTCCAATAG
GTTTTCTGCTTGTAGTCTCCAAGAAGAAAAGCTTATTTACGTTTCTGAAAGGACTGAACT
TCCAATGAAGCATCAAGCAGGTCATCAGAGACCTCCTAGTATTAGCATTACTCTGTCCAC
AGATTAATTTGTAATCGTTTTCTCATGTAACCAGTGAATCTGGAAATATGACTTTGCTTC
TTTATCAAAGTGCCCAGGGTCTTTCATCCCTGTTCCTGACAAGAGCACTGCTGTCTTAAA
TTCTGCTACCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16549513|dbj|BAB70823.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16549513|dbj|BAB70823.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-280, - strand, RNAz p=0.991918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-280, - strand, RNAz p=0.991918

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-605, gnl|bosTau2|chr4 (11549987-11549380)
               

               
               1-605, gnl|Hg17|chr7 (22758934-22758327)
               

               
               1-605, gnl|Mm7|chr5 (23005763-23005166)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-605, gnl|bosTau2|chr4 (11549987-11549380)
               

               
               1-605, gnl|Hg17|chr7 (22758934-22758327)
               

               
               1-605, gnl|Mm7|chr5 (23005763-23005166)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	1-605, gnl\|bosTau2\|chr4 (11549987-11549380)
	1-605, gnl\|Hg17\|chr7 (22758934-22758327)
	1-605, gnl\|Mm7\|chr5 (23005763-23005166)