Non-Coding RNA Search

Ss1.1-Pig3-SRG8014E02.3

Sequence:


               
               GCAGAGGCAGCATGCGCGTTCATCCCAGTTTGCCACCCGGCAGGCCGCGGAGGTGGCTGC
CGAGAAGTCCTTCAATAAGTTGATTGTCAACGGCCGTAGACTCAACGTGAAATGGGGCAG
GTCCCAAGCAGCCAGAGGGAAAGAAAAGGAGAAGGATGGAACCACAGACTCTGGAATCAA
GCTAGAGCCCGTTCCAGGGCTCCCAGGAGCTCTTCCTCCTCCCCCTGCCGCAGAGGAAGA
AGCCTCTGCCAACTACTTCAACCTGCCCCCGAGTGGTCCTCCGGCCGTGGTGAACATTGC
CCTGCCACCTCCTCCTGGCATCGCGCCCCCGCCGCCCCCAGGTTTTGGGCCACACATGTT
CCACCCAATGGGACCCCCCCCTCCCTTCATGAGGGCTCCAGGACCAATCCACTACCCTTC
TCAGGACCCCCAGAGGATGGGAGCGCATGCCGGGAAGCACGGCAGCCCCTAGCACGGTGT
CGCCGCTCGGGGCTCTGCGGAAGAGAGAGCGCTTGAAACCCCAGTAAATGCATCTTGGAA
TAAACATATTTTTCCTCCCTTTGTAGTTTCCAAGGTAGCTGAATGTATTCAGATGTGGGC
AGTCGGAGAACGACAGCCATGCTTCCCCGCGTGTGTTCGAAGGATCGATGGACCTGCAAT
AAGCTGCCGTTAACACATCTGGTTACCACTGTAACATTGCTAGTAAAACTTAATGCCTCT
TCCCTTCCTGTGCCGGGGACAAGCCGCTGGGTGAATTGGAGTGTCCTCTGGACTTAGCAT
CTTGATTATATGTTCATTTTGTATCTCGGGGTTGGGGGGCGGGAGAAAATTGACCTGCAG
TAAAGAAAACAAACAAATTCTGACCACTTTTATGTGCATCGAGTATTTTCCTTTTTATCA
TCTGGAAGAAGATGCCTAGTACTCACCGTGGGTTGTAGTGGCCTGAGTGGGATCCAGTGC
TTCTGCAGCCACCCTCTCAGAGAGACAAGTGGAAGTGGCACCCGGCACAGCTCAGTTCTT
TTCTCGCCCTCCTTTGCTCATTTGTTACCAGAGGAATCTGGCTGAGCGTTTTCCTTTTTG
ATGCCACCAGAAAAGACAAACATAAAGATTCCTTCTTACTCCTGCCAATCGGATGGAAAC
CGGTGTCGGGGCTGCGTGTCACTGAGGAAAGTGTTGTTTCCTAGGATGAAATTATTTTAA
ATATCTTAGGTAAAATGTGTAACACACTGAAAGGAAAAGCATTTTGTGTCTGAAAAGAAG
ACCTGGGACCTGCAGCTGGAGCCCGTGCATTGCCTATGGGGGTCTTCAGCCTCTCCTCTT
GGTTCCCTGCTTCAGGCAGCGAACTCTGTGTGGTCTTAGAATATTCGGGTGTGATTGAAT
TGTAGAAGGCAAACAAACAAGCAAAACAAAAAGCGGATGTTGTGTTGTGGTTGTGTTTTT
AAAAAATTAAAAACGGGTCAGTTTCCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAGGCAGCATGCGCGTTCATCCCAGTTTGCCACCCGGCAGGCCGCGGAGGTGGCTGC
CGAGAAGTCCTTCAATAAGTTGATTGTCAACGGCCGTAGACTCAACGTGAAATGGGGCAG
GTCCCAAGCAGCCAGAGGGAAAGAAAAGGAGAAGGATGGAACCACAGACTCTGGAATCAA
GCTAGAGCCCGTTCCAGGGCTCCCAGGAGCTCTTCCTCCTCCCCCTGCCGCAGAGGAAGA
AGCCTCTGCCAACTACTTCAACCTGCCCCCGAGTGGTCCTCCGGCCGTGGTGAACATTGC
CCTGCCACCTCCTCCTGGCATCGCGCCCCCGCCGCCCCCAGGTTTTGGGCCACACATGTT
CCACCCAATGGGACCCCCCCCTCCCTTCATGAGGGCTCCAGGACCAATCCACTACCCTTC
TCAGGACCCCCAGAGGATGGGAGCGCATGCCGGGAAGCACGGCAGCCCCTAGCACGGTGT
CGCCGCTCGGGGCTCTGCGGAAGAGAGAGCGCTTGAAACCCCAGTAAATGCATCTTGGAA
TAAACATATTTTTCCTCCCTTTGTAGTTTCCAAGGTAGCTGAATGTATTCAGATGTGGGC
AGTCGGAGAACGACAGCCATGCTTCCCCGCGTGTGTTCGAAGGATCGATGGACCTGCAAT
AAGCTGCCGTTAACACATCTGGTTACCACTGTAACATTGCTAGTAAAACTTAATGCCTCT
TCCCTTCCTGTGCCGGGGACAAGCCGCTGGGTGAATTGGAGTGTCCTCTGGACTTAGCAT
CTTGATTATATGTTCATTTTGTATCTCGGGGTTGGGGGGCGGGAGAAAATTGACCTGCAG
TAAAGAAAACAAACAAATTCTGACCACTTTTATGTGCATCGAGTATTTTCCTTTTTATCA
TCTGGAAGAAGATGCCTAGTACTCACCGTGGGTTGTAGTGGCCTGAGTGGGATCCAGTGC
TTCTGCAGCCACCCTCTCAGAGAGACAAGTGGAAGTGGCACCCGGCACAGCTCAGTTCTT
TTCTCGCCCTCCTTTGCTCATTTGTTACCAGAGGAATCTGGCTGAGCGTTTTCCTTTTTG
ATGCCACCAGAAAAGACAAACATAAAGATTCCTTCTTACTCCTGCCAATCGGATGGAAAC
CGGTGTCGGGGCTGCGTGTCACTGAGGAAAGTGTTGTTTCCTAGGATGAAATTATTTTAA
ATATCTTAGGTAAAATGTGTAACACACTGAAAGGAAAAGCATTTTGTGTCTGAAAAGAAG
ACCTGGGACCTGCAGCTGGAGCCCGTGCATTGCCTATGGGGGTCTTCAGCCTCTCCTCTT
GGTTCCCTGCTTCAGGCAGCGAACTCTGTGTGGTCTTAGAATATTCGGGTGTGATTGAAT
TGTAGAAGGCAAACAAACAAGCAAAACAAAAAGCGGATGTTGTGTTGTGGTTGTGTTTTT
AAAAAATTAAAAACGGGTCAGTTTCCAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               340-498, - strand, RNAz p=0.811749
               

               
               578-695, + strand, RNAz p=0.786056

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               340-498, - strand, RNAz p=0.811749
               

               
               578-695, + strand, RNAz p=0.786056

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_018047, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018047, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               340-1469, gnl|bosTau2|chr7 (39328608-39327472)
               

               
               340-1469, gnl|Hg17|chr5 (150051638-150050545)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               340-1469, gnl|bosTau2|chr7 (39328608-39327472)
               

               
               340-1469, gnl|Hg17|chr5 (150051638-150050545)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               nmm (0.398406)
               

               
               fcc (0.39557)
               

               
               ill (0.351185)
               

               
               cte (0.29274)
               

               
               ese (0.253004)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.398406)
               

               
               fcc (0.39557)
               

               
               ill (0.351185)
               

               
               cte (0.29274)
               

               
               ese (0.253004)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	340-498, - strand, RNAz p=0.811749
	578-695, + strand, RNAz p=0.786056

	340-1469, gnl\|bosTau2\|chr7 (39328608-39327472)
	340-1469, gnl\|Hg17\|chr5 (150051638-150050545)

	nmm (0.398406)
	fcc (0.39557)
	ill (0.351185)
	cte (0.29274)
	ese (0.253004)
	ece (0.229305)
	cmu (0.186393)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	cje (0.165235)
	hyp (0.142837)
	cst (0.140036)
	cly (0.120642)
	ecc (0.115035)