Non-Coding RNA Search

Ss1.1-Pig3-SRG8014E03.5

Sequence:


               
               ATTTCTCTGGCCTGGATCTCCCCGGGGAGCTGAAGCTGGATGCACCCTACAACTTCAACC
ACCCCTTCTCCATCAACAACCTGATGTCGGAGCAGACGCCAGCACCTCCCAAGCTGGACG
TGGGGTTCGGGGGCTATGGGGCAGAGGGGGGCGAGCCTGGGGTCTACTACCAGGGCCTCT
ATTCCCGCTCTCTGCTTAACGCATCCTAGCAGGGGGGCAGGAGCGTGGTGGGTGGGGTAT
GGCCGAAACTCACACCATTAAGCTCTTGGGGCCTGATCCTCCGGGGACAGTTTGCTTGTC
CCATCAGTTAACACCTTGGTTGGTCTATTACTTACTGTGGTGACTACCATCTCTGTGGGC
ATCCCCTGGGTACTGTGATAACTGCCACTGACACGTTGGTGGGCCCACTGGGTACTGTAG
AGTCTGCCATGTTGATTGATGTTATCAGTTGGCCTATTGGGTGCTCCAGCGGCCGCCATC
TGGGATGACATCTTGGTTGACCCTTTGGGTACAGTTCTGACACTATTTTAGTTGCGTTTT
CTTTGGCCCAGTGGGTGCTGTGATCACTTCTCTGTTGGTGACTTCTTGGCATGGTAGGTG
CCGTATTGGCTACCATCCTCCATAATACTGTTTTTGGCCCATTGGGTGCTATGATGGCAC
CACCTGGACTCTGACATAACCGGTGTGCCACTGGGCATCCATCATGATGGCCACCACGGC
CCCTGCGTTGGCCATGCCATCACCATCTCCGGTGCGAGCTGAGTGAGGGGCGGAGATGAG
GATACTCCTTGGTTTTTCTCCTGGAGCCCATCCCCCCTCTGGTCCTGGAGAAACCAGAAA
GGACTGGGTAGGGTGTGGGGAATTTCTACTGAAGTCTGGTTCTTGCCTGGGAAGCGGGAT
ACTGGCTGTGTTTGACCATTAAAGGCACCACTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCTCTGGCCTGGATCTCCCCGGGGAGCTGAAGCTGGATGCACCCTACAACTTCAACC
ACCCCTTCTCCATCAACAACCTGATGTCGGAGCAGACGCCAGCACCTCCCAAGCTGGACG
TGGGGTTCGGGGGCTATGGGGCAGAGGGGGGCGAGCCTGGGGTCTACTACCAGGGCCTCT
ATTCCCGCTCTCTGCTTAACGCATCCTAGCAGGGGGGCAGGAGCGTGGTGGGTGGGGTAT
GGCCGAAACTCACACCATTAAGCTCTTGGGGCCTGATCCTCCGGGGACAGTTTGCTTGTC
CCATCAGTTAACACCTTGGTTGGTCTATTACTTACTGTGGTGACTACCATCTCTGTGGGC
ATCCCCTGGGTACTGTGATAACTGCCACTGACACGTTGGTGGGCCCACTGGGTACTGTAG
AGTCTGCCATGTTGATTGATGTTATCAGTTGGCCTATTGGGTGCTCCAGCGGCCGCCATC
TGGGATGACATCTTGGTTGACCCTTTGGGTACAGTTCTGACACTATTTTAGTTGCGTTTT
CTTTGGCCCAGTGGGTGCTGTGATCACTTCTCTGTTGGTGACTTCTTGGCATGGTAGGTG
CCGTATTGGCTACCATCCTCCATAATACTGTTTTTGGCCCATTGGGTGCTATGATGGCAC
CACCTGGACTCTGACATAACCGGTGTGCCACTGGGCATCCATCATGATGGCCACCACGGC
CCCTGCGTTGGCCATGCCATCACCATCTCCGGTGCGAGCTGAGTGAGGGGCGGAGATGAG
GATACTCCTTGGTTTTTCTCCTGGAGCCCATCCCCCCTCTGGTCCTGGAGAAACCAGAAA
GGACTGGGTAGGGTGTGGGGAATTTCTACTGAAGTCTGGTTCTTGCCTGGGAAGCGGGAT
ACTGGCTGTGTTTGACCATTAAAGGCACCACTTCTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-515, gnl|bosTau2|chr18 (38113448-38112921)
               

               
               3-515, gnl|Hg17|chr19 (51067950-51068422)
               

               
               3-515, gnl|Mm7|chr7 (16696718-16696153)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-515, gnl|bosTau2|chr18 (38113448-38112921)
               

               
               3-515, gnl|Hg17|chr19 (51067950-51068422)
               

               
               3-515, gnl|Mm7|chr7 (16696718-16696153)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               col (0.195008)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               eje (0.0988338)

	3-515, gnl\|bosTau2\|chr18 (38113448-38112921)
	3-515, gnl\|Hg17\|chr19 (51067950-51068422)
	3-515, gnl\|Mm7\|chr7 (16696718-16696153)