Non-Coding RNA Search

Ss1.1-Pig3-SRG8014E06.3

Sequence:


               
               GACGTGACTGTGTGAGGAAGCCCTCAGCCACGAGGGTGGTGATGAGAAGCGGGGCTGGGC
TGGGGCAGTGGGTGAGAATCAAAGCTTATCTGCCCCTAATTACTCTTCCTCTTGTAACTT
GAGCCATTTCCAGTTGAAGCTGGCATTCTGGGTGCCCCTTGCACGCCCTGTGCCTGAGCC
ATTCCCTGCCCCTCCCTTAGAAAATTCACTGGCCAGACTGCTTTTCCTAGTGTTCCTTCT
GGGTCTGGTGCTTCATTGCCCTCCTTGCTCTACCCTCTGATCCCAGACCAAGTAGCTGCC
CTCATCAGAGGCAGCATCTTTCAGATACTTGGAGTATTTCAGCCCTGGTATAGGACCAGG
ATGGGATGTCTCTGGTTTCACATTGTCACTCTTTCCCAAGACCCTTCCTTCCGTTAGCTC
CCAGTGCCCTGCACACCTCCAGCCCTGCTGCTATTCCAGCGGCTCAGCGGCCTTTAGTCG
CGGCATGAAAAGCCTGGGCCTGCTCCCCATCAGAGAGAAAAAGTATGTCACCAAAGAAAC
ACTGGCCGTGCTCTAATACTAAGGTGCGAAGGAGGCCGGGGTCTCACCAGCGGTGAGGTG
AGCCTCCCTCCGTGTGCTCTGCCCCGCAGGCCTGAGGAGGACTTCTGGGAGATAAGAGGG
GGGGATGGAGTGGATTGTTGCCCTGCCAGCTTCCCAGTCACGGCCTGGATCTCCCCCCGC
CCCCGCCTGGCATCCTTCCTGCTTTTGAAAATCCCCCAATCGATGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGTGACTGTGTGAGGAAGCCCTCAGCCACGAGGGTGGTGATGAGAAGCGGGGCTGGGC
TGGGGCAGTGGGTGAGAATCAAAGCTTATCTGCCCCTAATTACTCTTCCTCTTGTAACTT
GAGCCATTTCCAGTTGAAGCTGGCATTCTGGGTGCCCCTTGCACGCCCTGTGCCTGAGCC
ATTCCCTGCCCCTCCCTTAGAAAATTCACTGGCCAGACTGCTTTTCCTAGTGTTCCTTCT
GGGTCTGGTGCTTCATTGCCCTCCTTGCTCTACCCTCTGATCCCAGACCAAGTAGCTGCC
CTCATCAGAGGCAGCATCTTTCAGATACTTGGAGTATTTCAGCCCTGGTATAGGACCAGG
ATGGGATGTCTCTGGTTTCACATTGTCACTCTTTCCCAAGACCCTTCCTTCCGTTAGCTC
CCAGTGCCCTGCACACCTCCAGCCCTGCTGCTATTCCAGCGGCTCAGCGGCCTTTAGTCG
CGGCATGAAAAGCCTGGGCCTGCTCCCCATCAGAGAGAAAAAGTATGTCACCAAAGAAAC
ACTGGCCGTGCTCTAATACTAAGGTGCGAAGGAGGCCGGGGTCTCACCAGCGGTGAGGTG
AGCCTCCCTCCGTGTGCTCTGCCCCGCAGGCCTGAGGAGGACTTCTGGGAGATAAGAGGG
GGGGATGGAGTGGATTGTTGCCCTGCCAGCTTCCCAGTCACGGCCTGGATCTCCCCCCGC
CCCCGCCTGGCATCCTTCCTGCTTTTGAAAATCCCCCAATCGATGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               236-391, + strand, RNAz p=0.997121

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-391, + strand, RNAz p=0.997121

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               18-724, gnl|bosTau2|chr19 (17186929-17186251)
               

               
               18-724, gnl|Hg17|chr17 (1371424-1370704)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-724, gnl|bosTau2|chr19 (17186929-17186251)
               

               
               18-724, gnl|Hg17|chr17 (1371424-1370704)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	18-724, gnl\|bosTau2\|chr19 (17186929-17186251)
	18-724, gnl\|Hg17\|chr17 (1371424-1370704)