Ss1.1-Pig3-SRG8014G10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGTATGCAGTGCAATTGGTCGAAATGTTGGATATGTCTGTCCCTGCGGTTGCTAAATT GAGGCGGCTTTTAGATAGTCTGCCAAGGGAGGCTTTACCAGATATCCTGACATCAATTAT CCGAACAAGCAACAAAGAGAAGCTCCAGATTTTAGATGCTGTGAGTCTGGAGGAGCGGTT CAAGATGACCATACCACTGCTTGTCAGACAAATTGAAGGCCTGAAATTGCTTCAGAAAAC CAGGAAACACAAGCAGGATGATGAGAAGCGGGTTATAGCAATACGCCCTATTCGGAGGAT TACACACATCCCAGGAGCTTTAGAAGATGAGGATGAGGATGAAGATAATGATGATATTGT CATGCTAGAGAAGAAAATACGCACATCCAATATGCCAGAGCAGGCCCACAAAGTCTGTGT CAAAGAGATAAAAAGGCTCAAGAAAATGCCTCAGTCAATGCCAGAATATGCTCTGACTAG AAATTATCTAGAACTTATGGTGGAACTTCCCTGGAACAAAAGTACAACTGACCGTCTGGA CATTCGAGCTGCCAGGATTCTTCTGGATAATGACCATTATGCCATGGAAAAATTGAAGAA AAGAGTGCTGGAGTACTTGGCTGTCAGACAGCTGAAAAACAACCTGAAGGGCCCCATTCT GTGCTTTGTTGGCCCTCCTGGTGTTGGTAAAACAAGTGTGGGAAGATCAGTGGCCAAGAC TCTGGGTCGAGAGTTCCACAGGATAGCCCTTGGAGGCGTGTGTGATCAGTCTGACATTCG CGGACACAGGCGCACCTATGTGGGCAGCATGCCTGGCCGGATAATCAATGGCTTGAAGAC TGTCGGGGTGAACAATCCAGTGTTCCTGTTGGATGAGGTGGACAAACTAGGAAAAAGTCT ACAGGGTGATCCTGCAGCAGCTCTGCTTGAGGTGTTGGATCCCGAACAAAACCATAACTT CACAGATCATTATCTAAATGTGGCCTTTGACCTTTCCCAAGTTCTTTTTATAGCGACTGC CAACACCACTGCTACTATTCCACCTGCTTTGTTGGACAGAATGGAGATCATTCAGGTGCC AGGGTATACACAAGAGGAGAAGATCGAGATCGCCCACAGGCACTTGATCCCAAAGCAACT GGAGCAGCATGGGCTGACTCCTCAGCAGATTCAGATCCCTCAGGTGACTACTCTGGACGT CATCACCAGGTACACCAGAGAGGCAGGGGTCCGCTCTCTGGACAGGAAGCTGGGGGCCAT TTGCCGAGCTGTTGCCGTGAAGGTGGCAGAGGGACAGCACCGAGAAGCCAAGTTGGACCG TCCTGGCGTGGCTGAGGGAGAAGGTGGCAAAGAACACATCCTAGAAGATGCAAAACCGGA CTCCATCGATGACACTACTGACTTGGGCCTACCACCTGAAATGCCAATTTTGATTGACTT CCATGCTCTGAAAGACATCCTCGGGCCCCCAATGTATGAAATGGAGGTGTCTGAGCGCTT GAGTCAACCAGGAGTGGCGATTGGCTTGGCCTGGACCCCCCTGGGTGGGGAAATTATGTT CGTGGAGGCGAGTCGCATGGACGGCGAGGGCCAGTTAACTCTGACTGGCCAGCTCGGGGA CGTCATGAAGGAGTCGGCCCATCTCGCCATCAGCTGGCTCCGCAGCAATGCCAAGAAATA CCATCTGACCAACGCTTCTGGAAGTTTTGATCTTCTTGAGAACACAGACATCCATCTGCA CTTCCCAGCTGGAGCTGTCACAAAAGATGGACCATCTGCTGGCGTTACCATAGCAACCTG TCTCGCCTCACTTTTTAGTGGGCGGCTGGTGCGTTCAGATGTAGCCATGACTGGTGAAAT CACACTGCGAGGTCTCGTTCTCCCAGTGGGTGGAATTAAAGACAAAGTGCTGGCAGCACA CAGAGCAGGACTGAAGCATGTCATCATTCCTCAGAGGAATGAAAAAGACCTTGAAGAAAT CCCAGGCAATGTCCGGCAGGACTTAAGTTTTGTCACAGCGAGCTGCCTGGATGAAGTTCT TAACGCAGCTTTTGATGGCGGCTTTACTGTGAAGACCAGACCTGGTCTTCTAAACAGCAA ACTGTAGGCCCAACGCGCAGCTTTTCAGAATTTTAAATGAAAAGTGCCAAAAGGTACTGA CAAGATGATTTTATTCACACCAGTAGGGTTAAGCAAAATGCCCCTAATTTGTGAACGTAA TCACAGTAACAAATCTCACTCGGGTGGTGGCTAGTGTTTATTACAGAAATGTTAATTTAA TAAATTGATTAAATGGGAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGTATGCAGTGCAATTGGTCGAAATGTTGGATATGTCTGTCCCTGCGGTTGCTAAATT GAGGCGGCTTTTAGATAGTCTGCCAAGGGAGGCTTTACCAGATATCCTGACATCAATTAT CCGAACAAGCAACAAAGAGAAGCTCCAGATTTTAGATGCTGTGAGTCTGGAGGAGCGGTT CAAGATGACCATACCACTGCTTGTCAGACAAATTGAAGGCCTGAAATTGCTTCAGAAAAC CAGGAAACACAAGCAGGATGATGAGAAGCGGGTTATAGCAATACGCCCTATTCGGAGGAT TACACACATCCCAGGAGCTTTAGAAGATGAGGATGAGGATGAAGATAATGATGATATTGT CATGCTAGAGAAGAAAATACGCACATCCAATATGCCAGAGCAGGCCCACAAAGTCTGTGT CAAAGAGATAAAAAGGCTCAAGAAAATGCCTCAGTCAATGCCAGAATATGCTCTGACTAG AAATTATCTAGAACTTATGGTGGAACTTCCCTGGAACAAAAGTACAACTGACCGTCTGGA CATTCGAGCTGCCAGGATTCTTCTGGATAATGACCATTATGCCATGGAAAAATTGAAGAA AAGAGTGCTGGAGTACTTGGCTGTCAGACAGCTGAAAAACAACCTGAAGGGCCCCATTCT GTGCTTTGTTGGCCCTCCTGGTGTTGGTAAAACAAGTGTGGGAAGATCAGTGGCCAAGAC TCTGGGTCGAGAGTTCCACAGGATAGCCCTTGGAGGCGTGTGTGATCAGTCTGACATTCG CGGACACAGGCGCACCTATGTGGGCAGCATGCCTGGCCGGATAATCAATGGCTTGAAGAC TGTCGGGGTGAACAATCCAGTGTTCCTGTTGGATGAGGTGGACAAACTAGGAAAAAGTCT ACAGGGTGATCCTGCAGCAGCTCTGCTTGAGGTGTTGGATCCCGAACAAAACCATAACTT CACAGATCATTATCTAAATGTGGCCTTTGACCTTTCCCAAGTTCTTTTTATAGCGACTGC CAACACCACTGCTACTATTCCACCTGCTTTGTTGGACAGAATGGAGATCATTCAGGTGCC AGGGTATACACAAGAGGAGAAGATCGAGATCGCCCACAGGCACTTGATCCCAAAGCAACT GGAGCAGCATGGGCTGACTCCTCAGCAGATTCAGATCCCTCAGGTGACTACTCTGGACGT CATCACCAGGTACACCAGAGAGGCAGGGGTCCGCTCTCTGGACAGGAAGCTGGGGGCCAT TTGCCGAGCTGTTGCCGTGAAGGTGGCAGAGGGACAGCACCGAGAAGCCAAGTTGGACCG TCCTGGCGTGGCTGAGGGAGAAGGTGGCAAAGAACACATCCTAGAAGATGCAAAACCGGA CTCCATCGATGACACTACTGACTTGGGCCTACCACCTGAAATGCCAATTTTGATTGACTT CCATGCTCTGAAAGACATCCTCGGGCCCCCAATGTATGAAATGGAGGTGTCTGAGCGCTT GAGTCAACCAGGAGTGGCGATTGGCTTGGCCTGGACCCCCCTGGGTGGGGAAATTATGTT CGTGGAGGCGAGTCGCATGGACGGCGAGGGCCAGTTAACTCTGACTGGCCAGCTCGGGGA CGTCATGAAGGAGTCGGCCCATCTCGCCATCAGCTGGCTCCGCAGCAATGCCAAGAAATA CCATCTGACCAACGCTTCTGGAAGTTTTGATCTTCTTGAGAACACAGACATCCATCTGCA CTTCCCAGCTGGAGCTGTCACAAAAGATGGACCATCTGCTGGCGTTACCATAGCAACCTG TCTCGCCTCACTTTTTAGTGGGCGGCTGGTGCGTTCAGATGTAGCCATGACTGGTGAAAT CACACTGCGAGGTCTCGTTCTCCCAGTGGGTGGAATTAAAGACAAAGTGCTGGCAGCACA CAGAGCAGGACTGAAGCATGTCATCATTCCTCAGAGGAATGAAAAAGACCTTGAAGAAAT CCCAGGCAATGTCCGGCAGGACTTAAGTTTTGTCACAGCGAGCTGCCTGGATGAAGTTCT TAACGCAGCTTTTGATGGCGGCTTTACTGTGAAGACCAGACCTGGTCTTCTAAACAGCAA ACTGTAGGCCCAACGCGCAGCTTTTCAGAATTTTAAATGAAAAGTGCCAAAAGGTACTGA CAAGATGATTTTATTCACACCAGTAGGGTTAAGCAAAATGCCCCTAATTTGTGAACGTAA TCACAGTAACAAATCTCACTCGGGTGGTGGCTAGTGTTTATTACAGAAATGTTAATTTAA TAAATTGATTAAATGGGAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 310-2109, + strand, RNAz p=0.931037 | |
| 930-1048, - strand, RNAz p=0.52525 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 310-2109, + strand, RNAz p=0.931037 | |
| 930-1048, - strand, RNAz p=0.52525 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC093910, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 12-148, gnl|bosTau2|chr18 (17047807-17047943) | |
| 12-148, gnl|canFam2|chr2 (69686498-69686348) | |
| 12-148, gnl|danRer3|chr18 (20625575-20625728) | |
| 12-148, gnl|dasNov1|scaffold_14037 (19108-18955) | |
| 12-148, gnl|fr1|chrUn (317319937-317319787) | |
| 12-148, gnl|galGal2|chr11 (7613422-7613262) | |
| 12-148, gnl|hg17|chr16 (46848006-46848159) | |
| 12-148, gnl|Hg17|chr16 (46848017-46848153) | |
| 12-148, gnl|loxAfr1|scaffold_106944 (1942-1790) | |
| 12-148, gnl|mm7|chr8 (85224403-85224554) | |
| 12-148, gnl|Mm7|chr8 (85224415-85224550) | |
| 12-148, gnl|monDom2|scaffold_35 (12524160-12524316) | |
| 12-148, gnl|oryCun1|scaffold_199725 (110367-110215) | |
| 12-148, gnl|panTro1|chrUn_random (10654051-10654204) | |
| 12-148, gnl|rheMac2|chr20 (46445793-46445946) | |
| 12-148, gnl|rn3|chr19 (21832574-21832423) | |
| 12-148, gnl|tetNig1|chrUn_random (98147380-98147521) | |
| 12-148, gnl|xenTro1|scaffold_387 (905041-905191) | |
| 271-436, gnl|bosTau2|chr18 (17051408-17051573) | |
| 271-436, gnl|Hg17|chr16 (46852835-46853000) | |
| 271-436, gnl|Mm7|chr8 (85227028-85227193) | |
| 527-790, gnl|bosTau2|chr18 (17060261-17060524) | |
| 527-790, gnl|Hg17|chr16 (46861424-46861687) | |
| 527-790, gnl|Mm7|chr8 (85232088-85232351) | |
| 930-1083, gnl|bosTau2|chr18 (17079272-17079425) | |
| 930-1083, gnl|Hg17|chr16 (46887425-46887578) | |
| 930-1083, gnl|Mm7|chr8 (85256239-85256392) | |
| 1207-1345, gnl|bosTau2|chr18 (17467146-17467008) | |
| 1207-1345, gnl|Hg17|chr16 (46894581-46894719) | |
| 1207-1345, gnl|Mm7|chr8 (85263483-85263621) | |
| 1484-1692, gnl|bosTau2|chr18 (17437920-17437712) | |
| 1484-1692, gnl|Hg17|chr16 (46938916-46939124) | |
| 1484-1692, gnl|Mm7|chr8 (85303859-85304067) | |
| 1873-2304, gnl|bosTau2|chr18 (17434262-17433835) | |
| 1873-2304, gnl|Hg17|chr16 (46942980-46943414) | |
| 1873-2304, gnl|Mm7|chr8 (85306785-85307186) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-148, gnl|bosTau2|chr18 (17047807-17047943) | |
| 12-148, gnl|canFam2|chr2 (69686498-69686348) | |
| 12-148, gnl|danRer3|chr18 (20625575-20625728) | |
| 12-148, gnl|dasNov1|scaffold_14037 (19108-18955) | |
| 12-148, gnl|fr1|chrUn (317319937-317319787) | |
| 12-148, gnl|galGal2|chr11 (7613422-7613262) | |
| 12-148, gnl|hg17|chr16 (46848006-46848159) | |
| 12-148, gnl|Hg17|chr16 (46848017-46848153) | |
| 12-148, gnl|loxAfr1|scaffold_106944 (1942-1790) | |
| 12-148, gnl|mm7|chr8 (85224403-85224554) | |
| 12-148, gnl|Mm7|chr8 (85224415-85224550) | |
| 12-148, gnl|monDom2|scaffold_35 (12524160-12524316) | |
| 12-148, gnl|oryCun1|scaffold_199725 (110367-110215) | |
| 12-148, gnl|panTro1|chrUn_random (10654051-10654204) | |
| 12-148, gnl|rheMac2|chr20 (46445793-46445946) | |
| 12-148, gnl|rn3|chr19 (21832574-21832423) | |
| 12-148, gnl|tetNig1|chrUn_random (98147380-98147521) | |
| 12-148, gnl|xenTro1|scaffold_387 (905041-905191) | |
| 271-436, gnl|bosTau2|chr18 (17051408-17051573) | |
| 271-436, gnl|Hg17|chr16 (46852835-46853000) | |
| 271-436, gnl|Mm7|chr8 (85227028-85227193) | |
| 527-790, gnl|bosTau2|chr18 (17060261-17060524) | |
| 527-790, gnl|Hg17|chr16 (46861424-46861687) | |
| 527-790, gnl|Mm7|chr8 (85232088-85232351) | |
| 930-1083, gnl|bosTau2|chr18 (17079272-17079425) | |
| 930-1083, gnl|Hg17|chr16 (46887425-46887578) | |
| 930-1083, gnl|Mm7|chr8 (85256239-85256392) | |
| 1207-1345, gnl|bosTau2|chr18 (17467146-17467008) | |
| 1207-1345, gnl|Hg17|chr16 (46894581-46894719) | |
| 1207-1345, gnl|Mm7|chr8 (85263483-85263621) | |
| 1484-1692, gnl|bosTau2|chr18 (17437920-17437712) | |
| 1484-1692, gnl|Hg17|chr16 (46938916-46939124) | |
| 1484-1692, gnl|Mm7|chr8 (85303859-85304067) | |
| 1873-2304, gnl|bosTau2|chr18 (17434262-17433835) | |
| 1873-2304, gnl|Hg17|chr16 (46942980-46943414) | |
| 1873-2304, gnl|Mm7|chr8 (85306785-85307186) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| hea (0.613497) | |
| fat (0.442282) | |
| cly (0.361925) | |
| rec (0.346141) | |
| eye (0.341006) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| fce (0.271592) | |
| cov (0.264306) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| jej (0.197844) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.613497) | |
| fat (0.442282) | |
| cly (0.361925) | |
| rec (0.346141) | |
| eye (0.341006) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| fce (0.271592) | |
| cov (0.264306) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| jej (0.197844) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) |