Ss1.1-Pig3-SRG8014G12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGGAATTGGGACCGGGCTGGAATCTGGTCCCTGGGGGCTGGTACTTGCACTTTAAAC CCCCTTCTCTGGGGGCTGATAGTTTGACGGATTTGTCTGTCGCACGTGCACATTCTGAGC ACAGACTAGGAATCCAGAATCTAAGAAAGTAGATTTGTTTCAAATCATCGTTTGGACAAC TTGCGAGCTTCTGATACAAAGCATTTCAGGAAAAATTGAACTGCATACGCAGGTTGAATT AGTTCTTAATAATGGGAAGAACATACATTGTAGAAGAGACTGTTGGCCAGTATCTTTCAA ACCTCAATCTTCAAGGGAAGACTTTTGTCTCTGGTCTTTTAATAGGGCAGTGTTCTTCAC AAAAGGATTATGTGATTCTTGCCACTAGAACGCCAGCCAAAGAGGAACAGAATGAGAGCC CCAAACATCCCAAAGCTAAGTTGGATAACTTGGATGAAGAATGGGCCACAGAACATGCCA ACCAGGTATCCAGAATGCTTCCAGGGGGACTTTTAGTTCTTGGGGTATTTATTGTTACAA CTTTAGAAATGGGAAATGAGTTTCAAAATACCCTGCGAAGACTTGTATTTGCTGTGGAAA AATCTCTGAATAAAAAGAGACTGTGGAATTTCACAGAGGAGGAGGTCTCAGAACGAGTGA CACTTCACATTTGCTCTTCTACAAAAAAAATACTTTGTCGAACTTATGATATCCATGATC CTAAGAGTTCTGCAAAACCAGCAGATTGGAAGTATCAAAACGGACTATCAGCTTCATGGC TTTCTTTAGAGTGTACAGTTTATATTAATATTCACGTCCCACTGTCTGCTACTTCTGTCA GCTATACTCTGGAGAAAAATACAAAGAATGGACTTGCACGCTGGGCCAAGCAAATAGAAA ATGGTGTTTATTTGATTAATGGACAAGTTAAAGATGAAGATTGTGAACTATTAGAAGGAC AGAAAAAATCTTTTAGAGGAAATACTCAAGCAACTAATCATTCTTTTGATGTCAGAGTGC TCACACAGTTGGTTTTGAATTCAGACCATAGGTCCACAGCCACAGTCCAGATCTGCAGTG GCTCTGTAAACCTTAAGGGTGCTGTGAAGTGCAGAGCTTATGTTCATAGCAATAAACCCA AGGTTAAGGATGCTGTACAGGCCATGAAGAGAGATATATTGAATACAGTTGCTGATCGTT GTGAAATACTATTTGAAGATCTGGTTTTGAATGAAATTCCAGAAAAAAAAGTTATGAGTA TAAAATAAAGTATTTTTTTGCATGTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGGAATTGGGACCGGGCTGGAATCTGGTCCCTGGGGGCTGGTACTTGCACTTTAAAC CCCCTTCTCTGGGGGCTGATAGTTTGACGGATTTGTCTGTCGCACGTGCACATTCTGAGC ACAGACTAGGAATCCAGAATCTAAGAAAGTAGATTTGTTTCAAATCATCGTTTGGACAAC TTGCGAGCTTCTGATACAAAGCATTTCAGGAAAAATTGAACTGCATACGCAGGTTGAATT AGTTCTTAATAATGGGAAGAACATACATTGTAGAAGAGACTGTTGGCCAGTATCTTTCAA ACCTCAATCTTCAAGGGAAGACTTTTGTCTCTGGTCTTTTAATAGGGCAGTGTTCTTCAC AAAAGGATTATGTGATTCTTGCCACTAGAACGCCAGCCAAAGAGGAACAGAATGAGAGCC CCAAACATCCCAAAGCTAAGTTGGATAACTTGGATGAAGAATGGGCCACAGAACATGCCA ACCAGGTATCCAGAATGCTTCCAGGGGGACTTTTAGTTCTTGGGGTATTTATTGTTACAA CTTTAGAAATGGGAAATGAGTTTCAAAATACCCTGCGAAGACTTGTATTTGCTGTGGAAA AATCTCTGAATAAAAAGAGACTGTGGAATTTCACAGAGGAGGAGGTCTCAGAACGAGTGA CACTTCACATTTGCTCTTCTACAAAAAAAATACTTTGTCGAACTTATGATATCCATGATC CTAAGAGTTCTGCAAAACCAGCAGATTGGAAGTATCAAAACGGACTATCAGCTTCATGGC TTTCTTTAGAGTGTACAGTTTATATTAATATTCACGTCCCACTGTCTGCTACTTCTGTCA GCTATACTCTGGAGAAAAATACAAAGAATGGACTTGCACGCTGGGCCAAGCAAATAGAAA ATGGTGTTTATTTGATTAATGGACAAGTTAAAGATGAAGATTGTGAACTATTAGAAGGAC AGAAAAAATCTTTTAGAGGAAATACTCAAGCAACTAATCATTCTTTTGATGTCAGAGTGC TCACACAGTTGGTTTTGAATTCAGACCATAGGTCCACAGCCACAGTCCAGATCTGCAGTG GCTCTGTAAACCTTAAGGGTGCTGTGAAGTGCAGAGCTTATGTTCATAGCAATAAACCCA AGGTTAAGGATGCTGTACAGGCCATGAAGAGAGATATATTGAATACAGTTGCTGATCGTT GTGAAATACTATTTGAAGATCTGGTTTTGAATGAAATTCCAGAAAAAAAAGTTATGAGTA TAAAATAAAGTATTTTTTTGCATGTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 582-696, + strand, RNAz p=0.522352 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 582-696, + strand, RNAz p=0.522352 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-124, gnl|bosTau2|chr16 (48998557-48998434) | |
| 1-124, gnl|Hg17|chr1 (183076641-183076763) | |
| 1-124, gnl|Mm7|chr1 (150318384-150318259) | |
| 349-487, gnl|bosTau2|chr16 (48992198-48992060) | |
| 349-487, gnl|canFam2|chr7 (22412735-22413033) | |
| 349-487, gnl|echTel1|scaffold_301812 (34618-34342) | |
| 349-487, gnl|hg17|chr1 (183083661-183083985) | |
| 349-487, gnl|Hg17|chr1 (183083809-183083947) | |
| 349-487, gnl|loxAfr1|scaffold_5873 (70708-70418) | |
| 349-487, gnl|mm7|chr1 (150314442-150314161) | |
| 349-487, gnl|Mm7|chr1 (150314315-150314176) | |
| 349-487, gnl|monDom2|scaffold_16 (40801856-40802131) | |
| 349-487, gnl|oryCun1|scaffold_169717 (21319-21027) | |
| 349-487, gnl|panTro1|chr1 (165664691-165665014) | |
| 349-487, gnl|rheMac2|chr1 (184342866-184342541) | |
| 349-487, gnl|rn3|chr13 (64698334-64698039) | |
| 582-696, gnl|bosTau2|chr16 (48986156-48986043) | |
| 582-696, gnl|canFam2|chr7 (22418749-22418937) | |
| 582-696, gnl|echTel1|scaffold_311559 (96534-96712) | |
| 582-696, gnl|galGal2|chr8 (9863311-9863116) | |
| 582-696, gnl|hg17|chr1 (183089165-183089350) | |
| 582-696, gnl|Hg17|chr1 (183089231-183089345) | |
| 582-696, gnl|loxAfr1|scaffold_5873 (64465-64281) | |
| 582-696, gnl|mm7|chr1 (150310248-150310073) | |
| 582-696, gnl|Mm7|chr1 (150310190-150310076) | |
| 582-696, gnl|monDom2|scaffold_16 (40806209-40806405) | |
| 582-696, gnl|oryCun1|scaffold_169717 (14116-13922) | |
| 582-696, gnl|panTro1|chr1 (165670197-165670385) | |
| 582-696, gnl|rheMac2|chr1 (184337749-184337565) | |
| 582-696, gnl|rn3|chr13 (64694121-64693946) | |
| 723-866, gnl|bosTau2|chr16 (48984234-48984091) | |
| 723-866, gnl|Hg17|chr1 (183091499-183091640) | |
| 723-866, gnl|Mm7|chr1 (150308030-150307887) | |
| 1159-1285, gnl|bosTau2|chr16 (48976585-48976458) | |
| 1159-1285, gnl|canFam2|chr7 (22427862-22428028) | |
| 1159-1285, gnl|echTel1|scaffold_301812 (7026-6868) | |
| 1159-1285, gnl|galGal2|chr8 (9851582-9851374) | |
| 1159-1285, gnl|hg17|chr1 (183099694-183099859) | |
| 1159-1285, gnl|Hg17|chr1 (183099741-183099866) | |
| 1159-1285, gnl|loxAfr1|scaffold_5873 (53456-53282) | |
| 1159-1285, gnl|mm7|chr1 (150300560-150300388) | |
| 1159-1285, gnl|Mm7|chr1 (150300501-150300379) | |
| 1159-1285, gnl|monDom2|scaffold_16 (40821509-40821670) | |
| 1159-1285, gnl|oryCun1|scaffold_178719 (95972-95802) | |
| 1159-1285, gnl|panTro1|chr1 (165680746-165680910) | |
| 1159-1285, gnl|rheMac2|chr1 (184327589-184327425) | |
| 1159-1285, gnl|rn3|chr13 (64684970-64684812) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-124, gnl|bosTau2|chr16 (48998557-48998434) | |
| 1-124, gnl|Hg17|chr1 (183076641-183076763) | |
| 1-124, gnl|Mm7|chr1 (150318384-150318259) | |
| 349-487, gnl|bosTau2|chr16 (48992198-48992060) | |
| 349-487, gnl|canFam2|chr7 (22412735-22413033) | |
| 349-487, gnl|echTel1|scaffold_301812 (34618-34342) | |
| 349-487, gnl|hg17|chr1 (183083661-183083985) | |
| 349-487, gnl|Hg17|chr1 (183083809-183083947) | |
| 349-487, gnl|loxAfr1|scaffold_5873 (70708-70418) | |
| 349-487, gnl|mm7|chr1 (150314442-150314161) | |
| 349-487, gnl|Mm7|chr1 (150314315-150314176) | |
| 349-487, gnl|monDom2|scaffold_16 (40801856-40802131) | |
| 349-487, gnl|oryCun1|scaffold_169717 (21319-21027) | |
| 349-487, gnl|panTro1|chr1 (165664691-165665014) | |
| 349-487, gnl|rheMac2|chr1 (184342866-184342541) | |
| 349-487, gnl|rn3|chr13 (64698334-64698039) | |
| 582-696, gnl|bosTau2|chr16 (48986156-48986043) | |
| 582-696, gnl|canFam2|chr7 (22418749-22418937) | |
| 582-696, gnl|echTel1|scaffold_311559 (96534-96712) | |
| 582-696, gnl|galGal2|chr8 (9863311-9863116) | |
| 582-696, gnl|hg17|chr1 (183089165-183089350) | |
| 582-696, gnl|Hg17|chr1 (183089231-183089345) | |
| 582-696, gnl|loxAfr1|scaffold_5873 (64465-64281) | |
| 582-696, gnl|mm7|chr1 (150310248-150310073) | |
| 582-696, gnl|Mm7|chr1 (150310190-150310076) | |
| 582-696, gnl|monDom2|scaffold_16 (40806209-40806405) | |
| 582-696, gnl|oryCun1|scaffold_169717 (14116-13922) | |
| 582-696, gnl|panTro1|chr1 (165670197-165670385) | |
| 582-696, gnl|rheMac2|chr1 (184337749-184337565) | |
| 582-696, gnl|rn3|chr13 (64694121-64693946) | |
| 723-866, gnl|bosTau2|chr16 (48984234-48984091) | |
| 723-866, gnl|Hg17|chr1 (183091499-183091640) | |
| 723-866, gnl|Mm7|chr1 (150308030-150307887) | |
| 1159-1285, gnl|bosTau2|chr16 (48976585-48976458) | |
| 1159-1285, gnl|canFam2|chr7 (22427862-22428028) | |
| 1159-1285, gnl|echTel1|scaffold_301812 (7026-6868) | |
| 1159-1285, gnl|galGal2|chr8 (9851582-9851374) | |
| 1159-1285, gnl|hg17|chr1 (183099694-183099859) | |
| 1159-1285, gnl|Hg17|chr1 (183099741-183099866) | |
| 1159-1285, gnl|loxAfr1|scaffold_5873 (53456-53282) | |
| 1159-1285, gnl|mm7|chr1 (150300560-150300388) | |
| 1159-1285, gnl|Mm7|chr1 (150300501-150300379) | |
| 1159-1285, gnl|monDom2|scaffold_16 (40821509-40821670) | |
| 1159-1285, gnl|oryCun1|scaffold_178719 (95972-95802) | |
| 1159-1285, gnl|panTro1|chr1 (165680746-165680910) | |
| 1159-1285, gnl|rheMac2|chr1 (184327589-184327425) | |
| 1159-1285, gnl|rn3|chr13 (64684970-64684812) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.135208) |