Non-Coding RNA Search

Ss1.1-Pig3-SRG8014G22.5

Sequence:


               
               GGGAAGTCCACATCCTAGAAAGAACCCAGGCTCCAGACTCCAGAAGGAATATCACCCCAA
AGTGACCTTTGCAGTGGGCTTGTCCAGCTGGCAGTCACTGCCGCTGCCATCTGTGCAGAA
TCAGCCACTGTGGGGGGGCTGGGCCCTCCTGCCTGGGGCAGCCCTTCCATATTGCCCCCG
CCCCATGGCTGAATTTGGGAGCTCTGTGTGGTCAGCAAAAGCCACTGCTGTCCAGGCTGG
TGCTGTGAGAATTAAGTGCTCAGAGGGCCCGGGCGTCCAGGAGACAAGAAAGTGTGTGGT
GTTTCAGTATGTTCAAAAGGGACAATCGCTTGCAGTTAGTAGATCTAGCGATCTAGTTGG
GAGATAATGGTGTTTACCCCATATGAAGTATTCAATAGTTCTACTTGTGAATTTGTATTT
ATTTTGAGTTATACTTGACACAGAATTCCTTTTTTTTTTTTTTAAAGAAAAATACTATGT
GTGTATTTTGAAAAGAAAATTCATGGATGTTAAAATTTCTGCATGGTTTCCAATTTTTCT
CACAACACTGAATTTGTTACCTTCTCCCGAAAGATCTTCACAGTGATTTTTGTCTGTATA
TATTTGAGGGCCTTTTTTAAAAAAAAAAGAAGAAAAAGAAAAAGACAAGAAAAATATAAT
TACTTGATTTTTGAGATTTAAAATAAACAAAAGGAGAGGCATTTTCAAAACTTCAGAGCT
TTCAGGAGGGCAGTAGAATATCAAATGAAGATTTCTGGAAGTATTTTTTGCAAACCTTCT
GGTTGAGCTGCAAGAAAATATTTATGGTGAGAACTTTTCTCTTTTTCCTGTTTTTTTTTT
TTTTGGTTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAGTCCACATCCTAGAAAGAACCCAGGCTCCAGACTCCAGAAGGAATATCACCCCAA
AGTGACCTTTGCAGTGGGCTTGTCCAGCTGGCAGTCACTGCCGCTGCCATCTGTGCAGAA
TCAGCCACTGTGGGGGGGCTGGGCCCTCCTGCCTGGGGCAGCCCTTCCATATTGCCCCCG
CCCCATGGCTGAATTTGGGAGCTCTGTGTGGTCAGCAAAAGCCACTGCTGTCCAGGCTGG
TGCTGTGAGAATTAAGTGCTCAGAGGGCCCGGGCGTCCAGGAGACAAGAAAGTGTGTGGT
GTTTCAGTATGTTCAAAAGGGACAATCGCTTGCAGTTAGTAGATCTAGCGATCTAGTTGG
GAGATAATGGTGTTTACCCCATATGAAGTATTCAATAGTTCTACTTGTGAATTTGTATTT
ATTTTGAGTTATACTTGACACAGAATTCCTTTTTTTTTTTTTTAAAGAAAAATACTATGT
GTGTATTTTGAAAAGAAAATTCATGGATGTTAAAATTTCTGCATGGTTTCCAATTTTTCT
CACAACACTGAATTTGTTACCTTCTCCCGAAAGATCTTCACAGTGATTTTTGTCTGTATA
TATTTGAGGGCCTTTTTTAAAAAAAAAAGAAGAAAAAGAAAAAGACAAGAAAAATATAAT
TACTTGATTTTTGAGATTTAAAATAAACAAAAGGAGAGGCATTTTCAAAACTTCAGAGCT
TTCAGGAGGGCAGTAGAATATCAAATGAAGATTTCTGGAAGTATTTTTTGCAAACCTTCT
GGTTGAGCTGCAAGAAAATATTTATGGTGAGAACTTTTCTCTTTTTCCTGTTTTTTTTTT
TTTTGGTTTGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               43-195, - strand, RNAz p=0.999697
               

               
               731-849, - strand, RNAz p=0.686696

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-195, - strand, RNAz p=0.999697
               

               
               731-849, - strand, RNAz p=0.686696

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               43-849, gnl|bosTau2|chr28 (27919891-27919099)
               

               
               43-849, gnl|Hg17|chr10 (80813971-80813204)
               

               
               43-849, gnl|Mm7|chr14 (23384543-23383855)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-849, gnl|bosTau2|chr28 (27919891-27919099)
               

               
               43-849, gnl|Hg17|chr10 (80813971-80813204)
               

               
               43-849, gnl|Mm7|chr14 (23384543-23383855)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cst (0.560146)
               

               
               elu (0.385356)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               cut (0.169924)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.560146)
               

               
               elu (0.385356)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               cut (0.169924)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               eje (0.0988338)

	43-195, - strand, RNAz p=0.999697
	731-849, - strand, RNAz p=0.686696

	43-849, gnl\|bosTau2\|chr28 (27919891-27919099)
	43-849, gnl\|Hg17\|chr10 (80813971-80813204)
	43-849, gnl\|Mm7\|chr14 (23384543-23383855)

	cst (0.560146)
	elu (0.385356)
	sme (0.305437)
	mas (0.210305)
	cut (0.169924)
	hlv (0.139256)
	che (0.136314)
	eje (0.0988338)