Non-Coding RNA Search

Ss1.1-Pig3-SRG8014H12.3

Sequence:


               
               CTGTGAACAATGAGATTGGAGTGAAGCAGCCCATCGCAGAAATAGGGCGGATTTGCAGTT
CCAGAAAGGTATATTTCCATACCGATGCAGCCCAGGCTGTTGGAAAAATCCCTCTCGATG
TCAATGACATGAAAATTGACCTTATGAGCATCAGTGGTCACAAAATCTATGGTCCCAAAG
GGGTTGGTGCTATCTACATTCGCCGCCGGCCCCGTGTGCGTGTAGAGGCCCTGCAGAGTG
GAGGGGGGCAGGAGCGGGGTATGCGGTCTGGGACAGTCCCCACACCCTTGGTGGTGGGGC
TGGGGGCTGCGTGTGAGGTGGCACAGCAAGAGATGGAGTATGACCACAAGCGGATCTCAA
AGTTAGCAGAGCGACTGATACAGAAGATCATGAAGAGCCTTCCAGACGTGGTGATGAATG
GAGACCCCGAGCACCATTACCCAGGCTGTATCAACCTCTCCTTTGCGTATGTGGAAGGGG
AAAGTCTGCTAATGGCACTCAAGGATGTCGCCTTATCCTCAGGGAGTGCCTGCACCTCTG
CATCCTTGGAACCTTCTTATGTCCTTCGAGCAATTGGCACTGATGAGGATTTAGCTCATT
CTTCTATCAGGTTTGGCATTGGCCGTTTCACTACTGAGGAGGAAGTGGACTACACAGTGG
AAAAGTGCATTCATCATGTGAAGCGTCTTCGAGAAATGAGCCCTCTCTGGGAGATGGTGC
AGGATGGCATTGACCTCAAGAGCATCAAGTGGACCCAACACTAGAAGAATGGGCCTTTGA
CTTTGTGTTGGCCTGGCTCCTCCTGCCTCACCAACCCATGCACAGCCAGGCACTTTGTTA
CACCCAGTGGGTGCTCCATGTTCAAACCAGAATTGATATAGTTCTGTTGACTTCAGCATT
GGCCTGCCTCCGAGACAAACACATGAAAACTCTCCGGCTTCAGCTCCCTTGGTGGGGAAC
ACTCCCCATTTCTTTTCAGGAGTCCTTCTCTGGTCTTATAGTGAGTAGATGTTTTCATCC
TGAAACAAGAGGGATATATGCTATGATATTGCTGCTGGACATGTCCATATCCTTGTTGGG
GCGAGCCAGAGGAACTGGAATAAGACTCTTTGTTCAGGGACCCTGACGCTGTACATGGAC
ATTTGACTTGTTGCTTACCACTGCTTAGAGAGACTGATTCATTCAGAAACAAGTATAATC
AACTATGATTTAATCTTCTTGTGGCTCCAAAGGCTACCTCTTCATTTTGACTGTAGACTG
AACAGCAAGTTTCTTAGAAGGCTTGTTTCCTTTGTGTCCTTGTCCTCCTTTCCTTTGACC
TAACAGAGTTAGAAATATGTACATGACTCTACTTATTATTCTAGTAATTTATGTTTCTGT
AAAAGAGTTGTTAATTTGCATATTGAGAAATAAAATCACCTTCCTCTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGAACAATGAGATTGGAGTGAAGCAGCCCATCGCAGAAATAGGGCGGATTTGCAGTT
CCAGAAAGGTATATTTCCATACCGATGCAGCCCAGGCTGTTGGAAAAATCCCTCTCGATG
TCAATGACATGAAAATTGACCTTATGAGCATCAGTGGTCACAAAATCTATGGTCCCAAAG
GGGTTGGTGCTATCTACATTCGCCGCCGGCCCCGTGTGCGTGTAGAGGCCCTGCAGAGTG
GAGGGGGGCAGGAGCGGGGTATGCGGTCTGGGACAGTCCCCACACCCTTGGTGGTGGGGC
TGGGGGCTGCGTGTGAGGTGGCACAGCAAGAGATGGAGTATGACCACAAGCGGATCTCAA
AGTTAGCAGAGCGACTGATACAGAAGATCATGAAGAGCCTTCCAGACGTGGTGATGAATG
GAGACCCCGAGCACCATTACCCAGGCTGTATCAACCTCTCCTTTGCGTATGTGGAAGGGG
AAAGTCTGCTAATGGCACTCAAGGATGTCGCCTTATCCTCAGGGAGTGCCTGCACCTCTG
CATCCTTGGAACCTTCTTATGTCCTTCGAGCAATTGGCACTGATGAGGATTTAGCTCATT
CTTCTATCAGGTTTGGCATTGGCCGTTTCACTACTGAGGAGGAAGTGGACTACACAGTGG
AAAAGTGCATTCATCATGTGAAGCGTCTTCGAGAAATGAGCCCTCTCTGGGAGATGGTGC
AGGATGGCATTGACCTCAAGAGCATCAAGTGGACCCAACACTAGAAGAATGGGCCTTTGA
CTTTGTGTTGGCCTGGCTCCTCCTGCCTCACCAACCCATGCACAGCCAGGCACTTTGTTA
CACCCAGTGGGTGCTCCATGTTCAAACCAGAATTGATATAGTTCTGTTGACTTCAGCATT
GGCCTGCCTCCGAGACAAACACATGAAAACTCTCCGGCTTCAGCTCCCTTGGTGGGGAAC
ACTCCCCATTTCTTTTCAGGAGTCCTTCTCTGGTCTTATAGTGAGTAGATGTTTTCATCC
TGAAACAAGAGGGATATATGCTATGATATTGCTGCTGGACATGTCCATATCCTTGTTGGG
GCGAGCCAGAGGAACTGGAATAAGACTCTTTGTTCAGGGACCCTGACGCTGTACATGGAC
ATTTGACTTGTTGCTTACCACTGCTTAGAGAGACTGATTCATTCAGAAACAAGTATAATC
AACTATGATTTAATCTTCTTGTGGCTCCAAAGGCTACCTCTTCATTTTGACTGTAGACTG
AACAGCAAGTTTCTTAGAAGGCTTGTTTCCTTTGTGTCCTTGTCCTCCTTTCCTTTGACC
TAACAGAGTTAGAAATATGTACATGACTCTACTTATTATTCTAGTAATTTATGTTTCTGT
AAAAGAGTTGTTAATTTGCATATTGAGAAATAAAATCACCTTCCTCTAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|3646132|emb|CAA09424.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|3646132|emb|CAA09424.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               164-342, gnl|bosTau2|chr13 (45114598-45114420)
               

               
               164-342, gnl|Hg17|chr20 (33726554-33726376)
               

               
               164-342, gnl|Mm7|chr2 (155869470-155869286)
               


               
               699-1428, gnl|bosTau2|chr13 (45110073-45109336)
               

               
               699-1428, gnl|Hg17|chr20 (33721023-33720305)
               

               
               699-1428, gnl|Mm7|chr2 (155865187-155864498)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               164-342, gnl|bosTau2|chr13 (45114598-45114420)
               

               
               164-342, gnl|Hg17|chr20 (33726554-33726376)
               

               
               164-342, gnl|Mm7|chr2 (155869470-155869286)
               


               
               699-1428, gnl|bosTau2|chr13 (45110073-45109336)
               

               
               699-1428, gnl|Hg17|chr20 (33721023-33720305)
               

               
               699-1428, gnl|Mm7|chr2 (155865187-155864498)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

	164-342, gnl\|bosTau2\|chr13 (45114598-45114420)
	164-342, gnl\|Hg17\|chr20 (33726554-33726376)
	164-342, gnl\|Mm7\|chr2 (155869470-155869286)

	699-1428, gnl\|bosTau2\|chr13 (45110073-45109336)
	699-1428, gnl\|Hg17\|chr20 (33721023-33720305)
	699-1428, gnl\|Mm7\|chr2 (155865187-155864498)

	duo (0.518403)
	pro (0.512033)
	sug (0.509165)
	vin (0.332557)
	tbr (0.308356)
	mgp (0.230681)
	spc (0.226732)
	mas (0.210305)
	hea (0.204499)
	ldo (0.194005)
	nlu (0.191681)
	gul (0.177588)
	sin (0.174948)
	cut (0.169924)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	cov (0.132153)
	kid (0.129735)
	ova (0.129132)
	eje (0.0988338)