Non-Coding RNA Search

Ss1.1-Pig3-SRG8014H24.5

Sequence:


               
               GTGTGTAAAGAGCTACCCGGCTGGCGGTGGATTTCTTTGCATGTGTGGCGGGCGGAGCTC
GGTCGGAGATGCACAGACACAGCCCTGGGCGGCGGAGTCTCCTTTCGGGGCCACGGGGAG
GAGAGAGCCAGGCGGGCCCAGCACAGTGGCCCGCGAGGCATCCTCGGGGGAGAGCTGAAG
TGGGCTGGACTCTTTCGCAAGACGGGAAGCTACACGGCCTCCGAGTTCCCGCGCGCCTGG
CGTTTTAAGAAGCTTCGGAAAGGAGCACATCAATCAAAGCTTTTCATAGACAAGCACTGA
TGTGCTGTGAGAGAGGATGAAAAACGCAGTGGTTTTCGCAGTATCTTCGTCTCTTAGTTC
TCTGGGTTCATCCCCCAGGGCAGCAAAACTCCATTCTGGTTAGTCATTTCCAAGATCTAA
TCAACCTAAATATTAAATAGAACAGCTGCCTCAAATTCCTAGGAATTTCAGAATGACTGA
CAATTCTGAAGCTGTTCCAAATTTTGAAGAGATGTTTGCCAGTAGATTCACAGAAGATGA
CAAAGAGTACCAGGAATACCTGAAACGCCCTCCTGAGTCCCCTCCAATTGTTGAGGAATG
GAATAGCAGAGCTGGTGGGAACCAAAGAAATAGAGGCAATCGGTTGCAAGATAACAGACA
GTTTAGAGGTAGGGATAGCAGACGGGGGTGGCCAAGTGACAGTCGATCCAATCAGTGGCC
TGGACGATCCTGGGGTAACAGTTACCCGCAGCACAGACAAGAACCTTACTACCCCCATCA
ATATGGAAACTATGGTCACAACCAGCGGCCTCCCTATGGCTACTACTGATAGAAATGTCA
GCAGCTTTTAGGAAAACCATTTACTCTGTTAACATGACAAAAGTTGATGTTGTATCTTCT
GTTGGTCATAGTTTTACATTGATTTTAGAGAATGGATTATTAATTTTGGGGAACTTGAGG
CTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGTAAAGAGCTACCCGGCTGGCGGTGGATTTCTTTGCATGTGTGGCGGGCGGAGCTC
GGTCGGAGATGCACAGACACAGCCCTGGGCGGCGGAGTCTCCTTTCGGGGCCACGGGGAG
GAGAGAGCCAGGCGGGCCCAGCACAGTGGCCCGCGAGGCATCCTCGGGGGAGAGCTGAAG
TGGGCTGGACTCTTTCGCAAGACGGGAAGCTACACGGCCTCCGAGTTCCCGCGCGCCTGG
CGTTTTAAGAAGCTTCGGAAAGGAGCACATCAATCAAAGCTTTTCATAGACAAGCACTGA
TGTGCTGTGAGAGAGGATGAAAAACGCAGTGGTTTTCGCAGTATCTTCGTCTCTTAGTTC
TCTGGGTTCATCCCCCAGGGCAGCAAAACTCCATTCTGGTTAGTCATTTCCAAGATCTAA
TCAACCTAAATATTAAATAGAACAGCTGCCTCAAATTCCTAGGAATTTCAGAATGACTGA
CAATTCTGAAGCTGTTCCAAATTTTGAAGAGATGTTTGCCAGTAGATTCACAGAAGATGA
CAAAGAGTACCAGGAATACCTGAAACGCCCTCCTGAGTCCCCTCCAATTGTTGAGGAATG
GAATAGCAGAGCTGGTGGGAACCAAAGAAATAGAGGCAATCGGTTGCAAGATAACAGACA
GTTTAGAGGTAGGGATAGCAGACGGGGGTGGCCAAGTGACAGTCGATCCAATCAGTGGCC
TGGACGATCCTGGGGTAACAGTTACCCGCAGCACAGACAAGAACCTTACTACCCCCATCA
ATATGGAAACTATGGTCACAACCAGCGGCCTCCCTATGGCTACTACTGATAGAAATGTCA
GCAGCTTTTAGGAAAACCATTTACTCTGTTAACATGACAAAAGTTGATGTTGTATCTTCT
GTTGGTCATAGTTTTACATTGATTTTAGAGAATGGATTATTAATTTTGGGGAACTTGAGG
CTTTTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R9Q6_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R9Q6_PONPY

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               413-965, gnl|bosTau2|chr14 (18977584-18978127)
               

               
               413-965, gnl|Hg17|chr15 (81447090-81449933)
               

               
               413-965, gnl|Mm7|chr7 (104009451-104008974)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               413-965, gnl|bosTau2|chr14 (18977584-18978127)
               

               
               413-965, gnl|Hg17|chr15 (81447090-81449933)
               

               
               413-965, gnl|Mm7|chr7 (104009451-104008974)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pro (0.512033)
               

               
               cki (0.330469)
               

               
               che (0.272628)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cki (0.330469)
               

               
               che (0.272628)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)

	413-965, gnl\|bosTau2\|chr14 (18977584-18978127)
	413-965, gnl\|Hg17\|chr15 (81447090-81449933)
	413-965, gnl\|Mm7\|chr7 (104009451-104008974)

	pro (0.512033)
	cki (0.330469)
	che (0.272628)
	nms (0.213858)
	mas (0.210305)
	nco (0.161734)
	fat (0.147427)
	nmm (0.132802)
	kid (0.129735)