Non-Coding RNA Search

Ss1.1-Pig3-SRG8014I07.3

Sequence:


               
               CATTAAAAATGAGTTCTGCTCACCATCTTCGGAGGCGAAGGCAGGGGAAGGGCACAGGAG
AACGATGTCTCAAGGTGTGCCACAGTTTTTCGACGCCCAGCGGACTTCCACCTATGATAA
TGTCCCTGCCCAGCCTGGGTCCCCTGGGGACAAAGCAGATGCACTGTCCCCCCAGGCCTA
TGACTCCAAGAGAGATGCTCCTGGCAGCCCAAACTCAGAAGCCAGGCCTGGGAAAAAGAA
CTCTGGAGAAGAGGAACTCGAATCTTTTCAGAGGATGTTGGTCCAGGAGCTGCGAAAGGA
AATACAAACACAGAAGCAAATGTATGAGGAACAGATTAAAAACCTTGAGAAGGAAAATTA
CGATGTCTGGACTAAGGTGGTGAGGCTCAATGAGGAACTGGAGAAGGAGAAGAAGAAGTC
TGCAGCCTTGGAAATCAGCCTCCGCAACGTGGAGCGCTCCCTGGAGGACGTGGAGAGGAG
GAACAAGGCCTTGGAAGAGGAAGTCAAGGAATTTGTCCGGTCGATGAAGGAGCCCAAGAC
CAACGCTTGAGGGTCCCAGGAGCACCAGGAGGACCGCCCTGCAAAGACCCAGCACTGCTC
CCTTTCTCAGTGCTACCTGAGGACTGGGTAGCAGCGTGACTTCCTTAAGAGGCAGAGGAC
GTGTGGGGGGAAACATCACATTTCCCAGGAAATAAATCAGTGGAGTTTGCAGGAGGCTGA
GTGACCGGAAACTTGAATGGACCTCTCTGAGCCCCTGGGGCTGTATTAGAAAGGACTGCA
TGCTTCCCCCTGGTCTTGGGCTGAGTGCAAAGGCACCTCCCATGGCTGGATGGTTGTATC
TACTGGAGACTTTGACCCAGGCCACAGGCCAGGACTCAGGCAACAGGCTGCCCCCAATCG
AGGCTAGACTGAGGCATTCGCTCTTTGTTTCCAGTGTGGAACCACCCACCTAGTCAGATG
GCCTCCGGTGTCTCTGAGACACAGTGGTAGGAAAGGATAGCCAGCTCTTGAGTTGGCCGT
GGTGCGCTGTGTTCTGGGCACCTGCTGAAGCCACGACCCTATTCTGCCACCCCCACCATG
ATGCACATGCTCCAGGGTTGAAAAGTCAAAATTAGTGTTAGATGAAGACAAAGCAAACAA
TAAACTGTATTTATGAAAGCAGCATCAACTAGAAAATTGTATTCAAATAAAGGGAAAAAA
AAAAAAAAAGCAGCAGCAGCAGGGCTGTTGGTAATCCATACAACTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTAAAAATGAGTTCTGCTCACCATCTTCGGAGGCGAAGGCAGGGGAAGGGCACAGGAG
AACGATGTCTCAAGGTGTGCCACAGTTTTTCGACGCCCAGCGGACTTCCACCTATGATAA
TGTCCCTGCCCAGCCTGGGTCCCCTGGGGACAAAGCAGATGCACTGTCCCCCCAGGCCTA
TGACTCCAAGAGAGATGCTCCTGGCAGCCCAAACTCAGAAGCCAGGCCTGGGAAAAAGAA
CTCTGGAGAAGAGGAACTCGAATCTTTTCAGAGGATGTTGGTCCAGGAGCTGCGAAAGGA
AATACAAACACAGAAGCAAATGTATGAGGAACAGATTAAAAACCTTGAGAAGGAAAATTA
CGATGTCTGGACTAAGGTGGTGAGGCTCAATGAGGAACTGGAGAAGGAGAAGAAGAAGTC
TGCAGCCTTGGAAATCAGCCTCCGCAACGTGGAGCGCTCCCTGGAGGACGTGGAGAGGAG
GAACAAGGCCTTGGAAGAGGAAGTCAAGGAATTTGTCCGGTCGATGAAGGAGCCCAAGAC
CAACGCTTGAGGGTCCCAGGAGCACCAGGAGGACCGCCCTGCAAAGACCCAGCACTGCTC
CCTTTCTCAGTGCTACCTGAGGACTGGGTAGCAGCGTGACTTCCTTAAGAGGCAGAGGAC
GTGTGGGGGGAAACATCACATTTCCCAGGAAATAAATCAGTGGAGTTTGCAGGAGGCTGA
GTGACCGGAAACTTGAATGGACCTCTCTGAGCCCCTGGGGCTGTATTAGAAAGGACTGCA
TGCTTCCCCCTGGTCTTGGGCTGAGTGCAAAGGCACCTCCCATGGCTGGATGGTTGTATC
TACTGGAGACTTTGACCCAGGCCACAGGCCAGGACTCAGGCAACAGGCTGCCCCCAATCG
AGGCTAGACTGAGGCATTCGCTCTTTGTTTCCAGTGTGGAACCACCCACCTAGTCAGATG
GCCTCCGGTGTCTCTGAGACACAGTGGTAGGAAAGGATAGCCAGCTCTTGAGTTGGCCGT
GGTGCGCTGTGTTCTGGGCACCTGCTGAAGCCACGACCCTATTCTGCCACCCCCACCATG
ATGCACATGCTCCAGGGTTGAAAAGTCAAAATTAGTGTTAGATGAAGACAAAGCAAACAA
TAAACTGTATTTATGAAAGCAGCATCAACTAGAAAATTGTATTCAAATAAAGGGAAAAAA
AAAAAAAAAGCAGCAGCAGCAGGGCTGTTGGTAATCCATACAACTCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61808525|ref|XP_614959.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61808525|ref|XP_614959.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               336-1244, gnl|bosTau2|chr11 (47599506-47600406)
               

               
               336-1244, gnl|Hg17|chr2 (68964763-68965638)
               

               
               336-1244, gnl|Mm7|chr6 (87535233-87534457)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               336-1244, gnl|bosTau2|chr11 (47599506-47600406)
               

               
               336-1244, gnl|Hg17|chr2 (68964763-68965638)
               

               
               336-1244, gnl|Mm7|chr6 (87535233-87534457)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cty (0.20816)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cst (0.140036)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cst (0.140036)

	336-1244, gnl\|bosTau2\|chr11 (47599506-47600406)
	336-1244, gnl\|Hg17\|chr2 (68964763-68965638)
	336-1244, gnl\|Mm7\|chr6 (87535233-87534457)