Non-Coding RNA Search

Ss1.1-Pig3-SRG8014K09.3

Sequence:


               
               TATAGAAATGTTTGAACAGTTGGCTTTCAAACATTTTCATTTTGTGGAGTGGTGCTTACC
ATTGGTACAGCTCTAAGCAAGCAAACGCAAACACTTTTAAGTGTATTTTGTCTGTTAGGT
GTTAGCCGGTTCTGCTATTTCATACAAATGTCTGGAAATCAATTGACTATTCCCTTTACC
TAGAGGGCAGAGACAAATGATCTCAATTCCAGAGAAATGACTGTTTTGGAGAAAACTGTG
TTGGTCTTTTAGCTCTTTTGTAATTAAATCTGGATGTACCTCAAAAGAATCTTAAGACTG
GTGATAAAATGCTTTCCTCAGGAGAAAGGAGGAAAAAAACCAACTGGAACTCAAAGCTTG
AAATTCTTTGACAAACATAAGATATCCAGGATGGGAAGTTGAAAGGGTTTCACTACATAG
CGTTCTGCACTAGCTGGAGCAGATGTCTTTCAGTGTGGTTATGGCGTGGACTTCATATTT
TCAAGAACTGGATCTGGGACCTGGAAGAATTATCAAGATGTGACACGAAGTTGGGAGCTG
GATTTTTTTATTTTTGAATTTATGGACTCTTGTCCTTGCTTTGAGAAAAGACAATGACTG
AGCAAGCACTGCCACCAGCGCTGTTACTGGGAATTCGGAGACCTGAGTTTTTGCCAGATC
CTCGGTGCAAACTCTGGCGACGCTCCATCCAAAGTGAAAAACGTCTTGTGCCTCCTGGTT
GCCGAGTATTCACCTGGACCTTCTAACCACCTTCCTTGAGCTATTCCATCAGCCTTCATA
TCTGATACCTGGAATTTTGCCCATGGTGATTCCTGCCACCTTACTACTGAAGAAGACAAC
CATGCCAGTGAACCACTGTGACTCGAGGCATCCAGCAAATTTGAATCATCATCATGTGGC
CTTCACCTCCACTCCTGTCCTGTTCTACCCAGATTCAACACAGCCCTTTGTAGTGAAGTC
AAACTCCTCAAGCCAAATAGCTGAAGCTGTTTTATCACAATTAAGGCTCAGTTTGTTCCA
TGAGTGTGCTTTCGTTTCTTCAGTTAAAGCCTTCAGAGACACATAATAAATTTGGACCAG
GGGATTTTAGTTATCAACACTGTCTGAAGAATGGCACCATCTTTTTGAGAACCACATTGA
ACCCCGCCCCAAAATCTCAAATGATTGAAGTTCATGAAGTATCTAAGATCCCATCCAAGT
CACTGAACTCTGTTTTTCCATTTCAAATCTGTAGTATCCTACTGAATAAGCAAGCAGATA
TTCTGACCGTTTGGGATTAAAACAAAGGCACAGTGAACTCAGAGCATCCTTGGGATTACT
CAGGAACCAGAACTTTTCACACAAATGTAAGAAATTCTACCAAGATATCCCTTTACCTAA
CAGCATCTCACAAAGCTCCAATCAGATTCCAGAAAAGGCCTCTTGATACATCCAGGTAGA
ACCTATATGGTAATCCCTTATGTTTATATAGCACTTTACAGTTTCAAAAGCACTTTTACA
TGCATTAATCTCAATTATCAAATAACACAAGTTATAATCCTGTTTTGCAAATGAGGAAAT
GGAAATTTAAAAGGTTGTCCAAGGTTAAACAGATACAAAATAGTAGAAGCCAGGCCTTCT
GACTCCCAGTCCAGTTCTCTCCTTGGAATTAACTTAGCCTCTATTTTACCCACAGTGTTA
AAATAAATGGAGATTGAGAACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATAGAAATGTTTGAACAGTTGGCTTTCAAACATTTTCATTTTGTGGAGTGGTGCTTACC
ATTGGTACAGCTCTAAGCAAGCAAACGCAAACACTTTTAAGTGTATTTTGTCTGTTAGGT
GTTAGCCGGTTCTGCTATTTCATACAAATGTCTGGAAATCAATTGACTATTCCCTTTACC
TAGAGGGCAGAGACAAATGATCTCAATTCCAGAGAAATGACTGTTTTGGAGAAAACTGTG
TTGGTCTTTTAGCTCTTTTGTAATTAAATCTGGATGTACCTCAAAAGAATCTTAAGACTG
GTGATAAAATGCTTTCCTCAGGAGAAAGGAGGAAAAAAACCAACTGGAACTCAAAGCTTG
AAATTCTTTGACAAACATAAGATATCCAGGATGGGAAGTTGAAAGGGTTTCACTACATAG
CGTTCTGCACTAGCTGGAGCAGATGTCTTTCAGTGTGGTTATGGCGTGGACTTCATATTT
TCAAGAACTGGATCTGGGACCTGGAAGAATTATCAAGATGTGACACGAAGTTGGGAGCTG
GATTTTTTTATTTTTGAATTTATGGACTCTTGTCCTTGCTTTGAGAAAAGACAATGACTG
AGCAAGCACTGCCACCAGCGCTGTTACTGGGAATTCGGAGACCTGAGTTTTTGCCAGATC
CTCGGTGCAAACTCTGGCGACGCTCCATCCAAAGTGAAAAACGTCTTGTGCCTCCTGGTT
GCCGAGTATTCACCTGGACCTTCTAACCACCTTCCTTGAGCTATTCCATCAGCCTTCATA
TCTGATACCTGGAATTTTGCCCATGGTGATTCCTGCCACCTTACTACTGAAGAAGACAAC
CATGCCAGTGAACCACTGTGACTCGAGGCATCCAGCAAATTTGAATCATCATCATGTGGC
CTTCACCTCCACTCCTGTCCTGTTCTACCCAGATTCAACACAGCCCTTTGTAGTGAAGTC
AAACTCCTCAAGCCAAATAGCTGAAGCTGTTTTATCACAATTAAGGCTCAGTTTGTTCCA
TGAGTGTGCTTTCGTTTCTTCAGTTAAAGCCTTCAGAGACACATAATAAATTTGGACCAG
GGGATTTTAGTTATCAACACTGTCTGAAGAATGGCACCATCTTTTTGAGAACCACATTGA
ACCCCGCCCCAAAATCTCAAATGATTGAAGTTCATGAAGTATCTAAGATCCCATCCAAGT
CACTGAACTCTGTTTTTCCATTTCAAATCTGTAGTATCCTACTGAATAAGCAAGCAGATA
TTCTGACCGTTTGGGATTAAAACAAAGGCACAGTGAACTCAGAGCATCCTTGGGATTACT
CAGGAACCAGAACTTTTCACACAAATGTAAGAAATTCTACCAAGATATCCCTTTACCTAA
CAGCATCTCACAAAGCTCCAATCAGATTCCAGAAAAGGCCTCTTGATACATCCAGGTAGA
ACCTATATGGTAATCCCTTATGTTTATATAGCACTTTACAGTTTCAAAAGCACTTTTACA
TGCATTAATCTCAATTATCAAATAACACAAGTTATAATCCTGTTTTGCAAATGAGGAAAT
GGAAATTTAAAAGGTTGTCCAAGGTTAAACAGATACAAAATAGTAGAAGCCAGGCCTTCT
GACTCCCAGTCCAGTTCTCTCCTTGGAATTAACTTAGCCTCTATTTTACCCACAGTGTTA
AAATAAATGGAGATTGAGAACCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-115, + strand, RNAz p=0.870272

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, + strand, RNAz p=0.870272

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017903, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017903, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-703, gnl|bosTau2|chr17 (43060596-43061304)
               

               
               1-703, gnl|Hg17|chr22 (29691602-29692319)
               

               
               1-703, gnl|Mm7|chr11 (3599271-3598560)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-703, gnl|bosTau2|chr17 (43060596-43061304)
               

               
               1-703, gnl|Hg17|chr22 (29691602-29692319)
               

               
               1-703, gnl|Mm7|chr11 (3599271-3598560)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	1-703, gnl\|bosTau2\|chr17 (43060596-43061304)
	1-703, gnl\|Hg17\|chr22 (29691602-29692319)
	1-703, gnl\|Mm7\|chr11 (3599271-3598560)

	nlu (0.191681)
	cut (0.169924)
	liv (0.146284)
	hyp (0.142837)
	ret (0.128733)
	eru (0.120048)
	ecc (0.115035)