Non-Coding RNA Search

Ss1.1-Pig3-SRG8014K15.5

Sequence:


               
               GACCACAATTTCATCTTCTTCCTTATACGTCAATGAACATTATGCCCATGATAGGACAAC
GCTTTATTCAAACAGTAAAGGGTTACCTTCCAGTTCAACCTTTACCTTGGAAGAGGGGAC
CATCTATTTGACTTCTGAGCCAAACACCCTGGAAATGCAGGATGATAATGCCTCTGTGCT
TGACGTCTATTTATAAGTGAAAATGGTGACCACCTAAGCAGATGAATGAGACATGAACAC
AGTTGTGGGAGAGAAGTTTCTCCACTCCAGAATTACCCAAAGGAAACTTGGCTGAGCCTC
ACTACACACAGGGTCATAATCAACGGGACGTGGAGTCTGCGAGATGTCAGGGAGCCTTGG
CGGAGAGGCTGATCAGCAGATGTGATGTGAAAAATACCACACTCTTCTGTCATTTGCTGT
TGCTTGCTGAACTGTGAAGAACTGCATGAACTCTATTTAAGCTGCTTTCTATACCATTGC
CAATCACCTTTTTTGAACTTGGAAGTGCTATTTTCCTATTGACACTTGCATTAATTCATT
TTGCATGCATCCAGTGATTATACATGAGCAACATATGTAATCTGCTTATATATTTTCTAA
AAATTCATCCATGCAAAATGGTAAAGTATAAATTCTGCTCTTTTTTGCAAAGTTATAATC
ATAGCCCATGTCACTAAAAATTTAAATTGGTTTCACATAAAGATCAGTGTAATAGGTCTG
CATATACTTTATAGAAAATTAGCTTCTATAAAGATTTTTTCACTGTTTACTAGTGAAATG
AGAAAAGCAAAGCTATTTATAAAAGGCCTTATGTCGTGTACATATATTGTCTTTGAAATA
TTTGTGATTTAGTTTATTGCTTGTAAAAGAGAAATTATATAATTTATTTAGTAAATACTA
TTGTAAACTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCACAATTTCATCTTCTTCCTTATACGTCAATGAACATTATGCCCATGATAGGACAAC
GCTTTATTCAAACAGTAAAGGGTTACCTTCCAGTTCAACCTTTACCTTGGAAGAGGGGAC
CATCTATTTGACTTCTGAGCCAAACACCCTGGAAATGCAGGATGATAATGCCTCTGTGCT
TGACGTCTATTTATAAGTGAAAATGGTGACCACCTAAGCAGATGAATGAGACATGAACAC
AGTTGTGGGAGAGAAGTTTCTCCACTCCAGAATTACCCAAAGGAAACTTGGCTGAGCCTC
ACTACACACAGGGTCATAATCAACGGGACGTGGAGTCTGCGAGATGTCAGGGAGCCTTGG
CGGAGAGGCTGATCAGCAGATGTGATGTGAAAAATACCACACTCTTCTGTCATTTGCTGT
TGCTTGCTGAACTGTGAAGAACTGCATGAACTCTATTTAAGCTGCTTTCTATACCATTGC
CAATCACCTTTTTTGAACTTGGAAGTGCTATTTTCCTATTGACACTTGCATTAATTCATT
TTGCATGCATCCAGTGATTATACATGAGCAACATATGTAATCTGCTTATATATTTTCTAA
AAATTCATCCATGCAAAATGGTAAAGTATAAATTCTGCTCTTTTTTGCAAAGTTATAATC
ATAGCCCATGTCACTAAAAATTTAAATTGGTTTCACATAAAGATCAGTGTAATAGGTCTG
CATATACTTTATAGAAAATTAGCTTCTATAAAGATTTTTTCACTGTTTACTAGTGAAATG
AGAAAAGCAAAGCTATTTATAAAAGGCCTTATGTCGTGTACATATATTGTCTTTGAAATA
TTTGTGATTTAGTTTATTGCTTGTAAAAGAGAAATTATATAATTTATTTAGTAAATACTA
TTGTAAACTATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               510-624, - strand, RNAz p=0.818651
               

               
               698-815, + strand, RNAz p=0.828543

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               510-624, - strand, RNAz p=0.818651
               

               
               698-815, + strand, RNAz p=0.828543

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC030587, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC030587, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               194-912, gnl|bosTau2|chr8 (21215858-21216573)
               

               
               194-912, gnl|Hg17|chr9 (68852917-68853612)
               

               
               194-912, gnl|Mm7|chr19 (23994565-23993840)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-912, gnl|bosTau2|chr8 (21215858-21216573)
               

               
               194-912, gnl|Hg17|chr9 (68852917-68853612)
               

               
               194-912, gnl|Mm7|chr19 (23994565-23993840)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               lyg (0.931718)
               

               
               ret (0.3862)
               

               
               mgm (0.360685)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.931718)
               

               
               ret (0.3862)
               

               
               mgm (0.360685)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	510-624, - strand, RNAz p=0.818651
	698-815, + strand, RNAz p=0.828543

	194-912, gnl\|bosTau2\|chr8 (21215858-21216573)
	194-912, gnl\|Hg17\|chr9 (68852917-68853612)
	194-912, gnl\|Mm7\|chr19 (23994565-23993840)

	lyg (0.931718)
	ret (0.3862)
	mgm (0.360685)
	mgp (0.230681)
	sag (0.182715)
	duo (0.172801)
	eye (0.170503)
	cst (0.140036)
	ute (0.132784)
	tra (0.123092)
	ebs (0.118301)