Non-Coding RNA Search

Ss1.1-Pig3-SRG8014L15.5

Sequence:


               
               TAAACGCCTGCTTCATTCGACATCTTCATCATCATTATTATTCATATTGGTGAGCTATCG
TGACCCACCTGAGCCAGGAAGACAGCTGAAATCGCTATCAGTTAGTGATGCCACAAGACT
CGTCCCCTGCGTGGATGTGGTCAAAATACCATTCAGATTGTTCTTCCTGGTTCCTGTCAT
CATCCTAGTGCGTCATATGATTTTCACACCAATTTAACCTGAGACTTTCTTTTGCGTCCT
AAGGCAATTAGTTTACTCTAGTGAACCCATTTCAAGAAGGATTTGGGGATCTCCTCCTCC
CCCCGCCAAATTAATTTCTCTCGTTTGAGCACAGGGATAGGGGATGCCATGATACCCATT
GTTTTTCCTGACCTGCTCTCCCTTGCTCTGATGTCCCCTAAATTCTCTAATCACATCATA
ACCTCTGTTACGAGTAGAGAGGAATGGGCTCCCTGAAATCGGACGCTGGAAGTTGTTGGG
GTGATGCTCCTCCCTGCGAACACTTAGCTTATTGAAGTGCCTCTATTTACATGTTCTTTA
GTTATAATATGTATTTTTCTAACAAATACACGTCTGTAATGGGTGTATATTATACTTTGT
ATATGTTATAACAAAAGCTAAACAGAGGCTAAAGTCTTTAGCAGAGAAGAACGGATTGCA
AATTCACGAGTTGGAGCTTCGCTTGTGGTTCTGTACTGGAGGACAGTGGCGACAACTTTC
TCTCGCTTGCATGAAGATCGAGTCGGGACTCTGATTAGAGCCATCATAGACACTAGCAAT
CTGACTCCCTTACCGTGACTTACACCAATACGGACCTGGTATTACCTGCTTTAATGGTAA
GGGATAGAAAATACTACTTTGTCTACACTGAAAAACACGATTCTTCATTGACAAGAAATA
GTCGTTATACAAGTAACATTCTGCAAATCAAACACAGTGAAAATATTACTGGAACGCAGA
ACCCTGGTATTTAATTTATGTTCCCTGCTGCAGACATTAGCCTATTTTAATTCCTTAGCC
ATCACATACGTGTTTTGGCTACACACTGAACACCAACTGAAGTCCCCAAGTAGGAATAAA
ACCTTAGCAAATTCCTGATTTGTGATTCTTTTCGCACTTCTCTTTGCAAGGCTAATTGTC
AGGTGCTTTGATTAAGGGTGGAAGGGTTAGCAAAGGCAAGTTTCGACCTTAGCAAGACTT
GCGGAAATTCAAACTCATTTTCATTCACTTACAGTCACTAACAAATCTGACTTTGGACTT
TAAAAAGGGGTGGGGGAGGGGAGGGACAGTTGCGCTTTTGCCAGCAGAAGCGTAAGGAGA
CCACAACTTAGAAATTTGCAACGTGTTCCTCCTCGGTGTAGACATTAGCCGATGTTTAGT
TTTAGGCCAAGTTCTACAAATACAGTATTGATTTGTATGCATTCTGGAAGCTTGCTATAT
CGTGGTTTGCGACAGCACGGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAACGCCTGCTTCATTCGACATCTTCATCATCATTATTATTCATATTGGTGAGCTATCG
TGACCCACCTGAGCCAGGAAGACAGCTGAAATCGCTATCAGTTAGTGATGCCACAAGACT
CGTCCCCTGCGTGGATGTGGTCAAAATACCATTCAGATTGTTCTTCCTGGTTCCTGTCAT
CATCCTAGTGCGTCATATGATTTTCACACCAATTTAACCTGAGACTTTCTTTTGCGTCCT
AAGGCAATTAGTTTACTCTAGTGAACCCATTTCAAGAAGGATTTGGGGATCTCCTCCTCC
CCCCGCCAAATTAATTTCTCTCGTTTGAGCACAGGGATAGGGGATGCCATGATACCCATT
GTTTTTCCTGACCTGCTCTCCCTTGCTCTGATGTCCCCTAAATTCTCTAATCACATCATA
ACCTCTGTTACGAGTAGAGAGGAATGGGCTCCCTGAAATCGGACGCTGGAAGTTGTTGGG
GTGATGCTCCTCCCTGCGAACACTTAGCTTATTGAAGTGCCTCTATTTACATGTTCTTTA
GTTATAATATGTATTTTTCTAACAAATACACGTCTGTAATGGGTGTATATTATACTTTGT
ATATGTTATAACAAAAGCTAAACAGAGGCTAAAGTCTTTAGCAGAGAAGAACGGATTGCA
AATTCACGAGTTGGAGCTTCGCTTGTGGTTCTGTACTGGAGGACAGTGGCGACAACTTTC
TCTCGCTTGCATGAAGATCGAGTCGGGACTCTGATTAGAGCCATCATAGACACTAGCAAT
CTGACTCCCTTACCGTGACTTACACCAATACGGACCTGGTATTACCTGCTTTAATGGTAA
GGGATAGAAAATACTACTTTGTCTACACTGAAAAACACGATTCTTCATTGACAAGAAATA
GTCGTTATACAAGTAACATTCTGCAAATCAAACACAGTGAAAATATTACTGGAACGCAGA
ACCCTGGTATTTAATTTATGTTCCCTGCTGCAGACATTAGCCTATTTTAATTCCTTAGCC
ATCACATACGTGTTTTGGCTACACACTGAACACCAACTGAAGTCCCCAAGTAGGAATAAA
ACCTTAGCAAATTCCTGATTTGTGATTCTTTTCGCACTTCTCTTTGCAAGGCTAATTGTC
AGGTGCTTTGATTAAGGGTGGAAGGGTTAGCAAAGGCAAGTTTCGACCTTAGCAAGACTT
GCGGAAATTCAAACTCATTTTCATTCACTTACAGTCACTAACAAATCTGACTTTGGACTT
TAAAAAGGGGTGGGGGAGGGGAGGGACAGTTGCGCTTTTGCCAGCAGAAGCGTAAGGAGA
CCACAACTTAGAAATTTGCAACGTGTTCCTCCTCGGTGTAGACATTAGCCGATGTTTAGT
TTTAGGCCAAGTTCTACAAATACAGTATTGATTTGTATGCATTCTGGAAGCTTGCTATAT
CGTGGTTTGCGACAGCACGGGACT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-113, - strand, RNAz p=0.999554
               

               
               539-656, - strand, RNAz p=0.57443
               

               
               959-1077, - strand, RNAz p=0.506181

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, - strand, RNAz p=0.999554
               

               
               539-656, - strand, RNAz p=0.57443
               

               
               959-1077, - strand, RNAz p=0.506181

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1464, gnl|bosTau2|chr19 (31644788-31643314)
               

               
               1-1464, gnl|Hg17|chr13 (93855923-93857367)
               

               
               1-1464, gnl|Mm7|chr14 (112379775-112381207)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1464, gnl|bosTau2|chr19 (31644788-31643314)
               

               
               1-1464, gnl|Hg17|chr13 (93855923-93857367)
               

               
               1-1464, gnl|Mm7|chr14 (112379775-112381207)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-113, - strand, RNAz p=0.999554
	539-656, - strand, RNAz p=0.57443
	959-1077, - strand, RNAz p=0.506181

	1-1464, gnl\|bosTau2\|chr19 (31644788-31643314)
	1-1464, gnl\|Hg17\|chr13 (93855923-93857367)
	1-1464, gnl\|Mm7\|chr14 (112379775-112381207)