Non-Coding RNA Search

Ss1.1-Pig3-SRG8014N01.3

Sequence:


               
               GCTGCAGATGTTATAGTTCTGGGCCCTCGGTTCTTTTCCCGCCGCCCCACAAGCTTTACC
CTTTGAGGAAAAGGCAGCCCTCCAGATTTTGTAGACATTTTTCTTAATATTTTTAACATT
GTGTCTTTTAAAAGAAATGTTTTACACAGTTCATCCAAAGAGCAGAGAACTGAACTTCTC
ACTATTGCCTTGGCCCTGACAGCTGTTCCCAGCACCCTTTTCTCAAGAAAAGTCAATTCC
CAGGTGCTTATTGGACAGCCTTCGAGGGGGAAGATGAGGGAAGCTGCCAGCTCACCCTTC
CAGGACCCTAGTGTGGGGGCCGAGCCTCATGGACCTGACCTCAGAGGTGCACCAGTGCCG
CCAGGTAGACAGAGCTGCAGCGTCGATCGCGCCTCATTCCTCCCTGGGGATTTATTTCTG
TTAGGGCCTCGGTAGCGCTCCGCGTGAAGCGAAGATCAAGTTCAGTGCTCTGGGATTTTT
AGGAACAAAAACTGTGACTTCTGGATTGGGGATGGATTTTTGTGCTAGGGGTGGGGTCAT
GGGTTAATGTTGAACAATTTTTAAGTCTGTATTATGTTTAAAAATATTAATGATTTAAAA
GTTAAGATTTTTAATTTTATATGTGAAAATACTTCCTGTTGGCTACAAGGGAAGCTCCAG
TGGTGTCTTCTTATGTGCTGTTAAATATATATTCTATACTTGGGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCAGATGTTATAGTTCTGGGCCCTCGGTTCTTTTCCCGCCGCCCCACAAGCTTTACC
CTTTGAGGAAAAGGCAGCCCTCCAGATTTTGTAGACATTTTTCTTAATATTTTTAACATT
GTGTCTTTTAAAAGAAATGTTTTACACAGTTCATCCAAAGAGCAGAGAACTGAACTTCTC
ACTATTGCCTTGGCCCTGACAGCTGTTCCCAGCACCCTTTTCTCAAGAAAAGTCAATTCC
CAGGTGCTTATTGGACAGCCTTCGAGGGGGAAGATGAGGGAAGCTGCCAGCTCACCCTTC
CAGGACCCTAGTGTGGGGGCCGAGCCTCATGGACCTGACCTCAGAGGTGCACCAGTGCCG
CCAGGTAGACAGAGCTGCAGCGTCGATCGCGCCTCATTCCTCCCTGGGGATTTATTTCTG
TTAGGGCCTCGGTAGCGCTCCGCGTGAAGCGAAGATCAAGTTCAGTGCTCTGGGATTTTT
AGGAACAAAAACTGTGACTTCTGGATTGGGGATGGATTTTTGTGCTAGGGGTGGGGTCAT
GGGTTAATGTTGAACAATTTTTAAGTCTGTATTATGTTTAAAAATATTAATGATTTAAAA
GTTAAGATTTTTAATTTTATATGTGAAAATACTTCCTGTTGGCTACAAGGGAAGCTCCAG
TGGTGTCTTCTTATGTGCTGTTAAATATATATTCTATACTTGGGAAGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-708, gnl|bosTau2|chr19 (19033195-19032485)
               

               
               1-708, gnl|Hg17|chr17 (3662898-3662188)
               

               
               1-708, gnl|Mm7|chr11 (73160932-73161628)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr19 (19033195-19032485)
               

               
               1-708, gnl|Hg17|chr17 (3662898-3662188)
               

               
               1-708, gnl|Mm7|chr11 (73160932-73161628)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.229305)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-708, gnl\|bosTau2\|chr19 (19033195-19032485)
	1-708, gnl\|Hg17\|chr17 (3662898-3662188)
	1-708, gnl\|Mm7\|chr11 (73160932-73161628)

	ece (0.229305)
	cst (0.140036)
	che (0.136314)
	ssp (0.13552)
	med (0.116252)
	nbm (0.0993246)
	eje (0.0988338)