Ss1.1-Pig3-SRG8014N02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCACGCAGGCCGCATCCAAAGCATCTGGTCCCGGCTGCTGGAGCGGGGGCTCCGGAGC CAGTGTGAGTCTCTCCGGGGCCGGAAGGCCTCCCTGGAGGAGCTGCAGTCTGTGCACTCC GAGCGCCACGTGCTCCTCTATGGCACCAACCCGCTCAGCCGCCTCAAACTGGACAATGGG AAGCTGGCAGGGCTCCTGGCACAGCGGATGTTTGTGATGCTGCCCTGTGGTGGGGTTGGG GTGGACACCGACACCATCTGGAATGAGCTGCACTCCTCCAACGCGGCCCGCTGGGCGGCA GGCAGCGTCACCGACCTCGCCTTCAAAGTGGCCTCCCGGGAGCTCAAGAACGGTTTTGCT GTGGTTCGGCCCCCAGGACACCACGCAGACCATTCCACAGCCATGGGCTTCTGCTTCTTC AACTCGGTGGCCATCGCCTGCCGGCAGCTGCAGCAACAAGGCAAGGCCGGCAAGATCCTC ATTGTGGACTGGGACGTTCACCACGGCAATGGCACCCAGCAGACCTTCTACCAGGACCCC AGTGTGCTCTACATCTCCCTTCATCGCCATGACGATGGCAACTTCTTCCCGGGCAGCGGG GCTGTGGATGAGGTGGGAGCTGGCAGCGGTGAGGGCTTCAATGTCAACGTGGCCTGGGCT GGAGGTCTGGACCCCCCAATGGGGGATCCCGAATACCTGGCTGCCTTCAGGACGGTCGTG ATGCCCATCGCCCGAGAGTTCTCTCCGGACCTGGTCCTCGTGTCCGCGGGCTTTGATGCT GCCGAGGGCCACCCGCCCCCGCTGGGTGGCTACCATGTGTCCGCCAAATGTTTTGGCTAC ATGACGCAGCAGCTGATGAGCTTGGCGGGAGGTGCGGTGGTGCTGGCCTTGGAGGGCGGC CATGACCTCACAGCCATCTGTGACGCCTCCGAGGCCTGTGTGGCTGCTCTTCTAGGCAAC AAGGTGGATCCCCTCTCAGAAGAAGGCTGGAAACAGAAACCCAACCTCAACGCCATCCGC TCCCTGGAAGCTGTGATCCGGGTGCACAGTGAATACTGGGGCTGCATGCAGCACCTGGCC TCCTGTCCAAACTCCTGGGTACCCAGGGTGCCAGGGGCCGACGCAGAGGAAGTGGAGGCA GTGACTGCACTGGCATCCCTCTCCGTGGGCATCCTGGCTGAAGAGCGGACCTCAGTGCAG CTGGTGGAGGAGGAAGAACCCATGAATCTCTAAGGCTTCAGAACGGATCTGCCGCCAGCC TCGCCCTGCCCTGCCCTTCGGACCTGGTTCTCCTCTAGCCTCTGGCAAGAGTTCCCGCTC CCCGCTCCCGGGGTCTTCAGAGATCCTTCGGGCAGGTAGTCGGGGCCAGAGAACGGCCCC TTGACGGTCACCCCAAGGAGCCTGAGAAGGCCCCTGGGTCTAGGAGAGGGACCAAAGAGG ACCCTGCGAGGAGGCAGGCTGGGGACCAGCCGGGCCCCAGTAGGGCCCTCCCCAAAGCAG AGCCTACCCTCTGGGGGTTCAGGCCCCAGGCTGGGCCCCATTCCTCAGGACCGCGCAGAG GAGGACTGGCCCAGCCGGGCCCCCCATAACCACTATTCTCGGCTCTATAGACCCCGGACT TTGCACACAGCCCCAGGCTCCACACAGAAATGTGAACTTGGCCTCAGCCAGAGTGGCCCT TCCTGGGCTCTGGGGGGAGGCGGGTTGGGGGCAGGAGCCGGGGAGTCCCATATCCCTGAG TGCAGGGGGAGTCCCCCCTCTCACCTGCTTCCTCAGATGACTCTGAAAGCTTCCTCCCCA CCGCTGGGCAGAGAGACAAAGTTCCTTCCGAGAGCAGCCACGGGTGGGCCCCCCATCTGG TCCCTGCCCCGACCAGAGGCCACCCGTGTCAACCATCTCAGCCCCCTGGTAGAGCAGACA GGCGCTCTCGGAGTTCTGCGCTTCCTGATCCAATGGTGCCAAACCCTTCATCTCCCCTCA GAAGCACCCAGGGCTCCTCACTCACCGCCCCCCCTCCACGAGCCTGCCTTCTGGCGTCTC CCCCACCCCGGCTGCCTCCTGCCCTACATAGGACTAGCTTGGCTGAGGGGAAAGGGGGTG GGAGAATGGATGGGTGGCACAGGGGAGGGGATGCTGCCCTGGCACCGTCTTCGAGGCTTC TGGGGTCCAGGCCTGGGGCCAAGAAGGAAAGTATTTGTGTGTGAGAGAGTGAGAGAGTGT GTGTGTGTGTGCACGCGCGTGTGTCTTCCCCAGGACCACCATACCCTGTGTATGTATGCA TGTTTTTGTAAAAAAGAAAAAAAAGAAAAGAAAAAAATCTGAACAATAAATGTTTTATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCACGCAGGCCGCATCCAAAGCATCTGGTCCCGGCTGCTGGAGCGGGGGCTCCGGAGC CAGTGTGAGTCTCTCCGGGGCCGGAAGGCCTCCCTGGAGGAGCTGCAGTCTGTGCACTCC GAGCGCCACGTGCTCCTCTATGGCACCAACCCGCTCAGCCGCCTCAAACTGGACAATGGG AAGCTGGCAGGGCTCCTGGCACAGCGGATGTTTGTGATGCTGCCCTGTGGTGGGGTTGGG GTGGACACCGACACCATCTGGAATGAGCTGCACTCCTCCAACGCGGCCCGCTGGGCGGCA GGCAGCGTCACCGACCTCGCCTTCAAAGTGGCCTCCCGGGAGCTCAAGAACGGTTTTGCT GTGGTTCGGCCCCCAGGACACCACGCAGACCATTCCACAGCCATGGGCTTCTGCTTCTTC AACTCGGTGGCCATCGCCTGCCGGCAGCTGCAGCAACAAGGCAAGGCCGGCAAGATCCTC ATTGTGGACTGGGACGTTCACCACGGCAATGGCACCCAGCAGACCTTCTACCAGGACCCC AGTGTGCTCTACATCTCCCTTCATCGCCATGACGATGGCAACTTCTTCCCGGGCAGCGGG GCTGTGGATGAGGTGGGAGCTGGCAGCGGTGAGGGCTTCAATGTCAACGTGGCCTGGGCT GGAGGTCTGGACCCCCCAATGGGGGATCCCGAATACCTGGCTGCCTTCAGGACGGTCGTG ATGCCCATCGCCCGAGAGTTCTCTCCGGACCTGGTCCTCGTGTCCGCGGGCTTTGATGCT GCCGAGGGCCACCCGCCCCCGCTGGGTGGCTACCATGTGTCCGCCAAATGTTTTGGCTAC ATGACGCAGCAGCTGATGAGCTTGGCGGGAGGTGCGGTGGTGCTGGCCTTGGAGGGCGGC CATGACCTCACAGCCATCTGTGACGCCTCCGAGGCCTGTGTGGCTGCTCTTCTAGGCAAC AAGGTGGATCCCCTCTCAGAAGAAGGCTGGAAACAGAAACCCAACCTCAACGCCATCCGC TCCCTGGAAGCTGTGATCCGGGTGCACAGTGAATACTGGGGCTGCATGCAGCACCTGGCC TCCTGTCCAAACTCCTGGGTACCCAGGGTGCCAGGGGCCGACGCAGAGGAAGTGGAGGCA GTGACTGCACTGGCATCCCTCTCCGTGGGCATCCTGGCTGAAGAGCGGACCTCAGTGCAG CTGGTGGAGGAGGAAGAACCCATGAATCTCTAAGGCTTCAGAACGGATCTGCCGCCAGCC TCGCCCTGCCCTGCCCTTCGGACCTGGTTCTCCTCTAGCCTCTGGCAAGAGTTCCCGCTC CCCGCTCCCGGGGTCTTCAGAGATCCTTCGGGCAGGTAGTCGGGGCCAGAGAACGGCCCC TTGACGGTCACCCCAAGGAGCCTGAGAAGGCCCCTGGGTCTAGGAGAGGGACCAAAGAGG ACCCTGCGAGGAGGCAGGCTGGGGACCAGCCGGGCCCCAGTAGGGCCCTCCCCAAAGCAG AGCCTACCCTCTGGGGGTTCAGGCCCCAGGCTGGGCCCCATTCCTCAGGACCGCGCAGAG GAGGACTGGCCCAGCCGGGCCCCCCATAACCACTATTCTCGGCTCTATAGACCCCGGACT TTGCACACAGCCCCAGGCTCCACACAGAAATGTGAACTTGGCCTCAGCCAGAGTGGCCCT TCCTGGGCTCTGGGGGGAGGCGGGTTGGGGGCAGGAGCCGGGGAGTCCCATATCCCTGAG TGCAGGGGGAGTCCCCCCTCTCACCTGCTTCCTCAGATGACTCTGAAAGCTTCCTCCCCA CCGCTGGGCAGAGAGACAAAGTTCCTTCCGAGAGCAGCCACGGGTGGGCCCCCCATCTGG TCCCTGCCCCGACCAGAGGCCACCCGTGTCAACCATCTCAGCCCCCTGGTAGAGCAGACA GGCGCTCTCGGAGTTCTGCGCTTCCTGATCCAATGGTGCCAAACCCTTCATCTCCCCTCA GAAGCACCCAGGGCTCCTCACTCACCGCCCCCCCTCCACGAGCCTGCCTTCTGGCGTCTC CCCCACCCCGGCTGCCTCCTGCCCTACATAGGACTAGCTTGGCTGAGGGGAAAGGGGGTG GGAGAATGGATGGGTGGCACAGGGGAGGGGATGCTGCCCTGGCACCGTCTTCGAGGCTTC TGGGGTCCAGGCCTGGGGCCAAGAAGGAAAGTATTTGTGTGTGAGAGAGTGAGAGAGTGT GTGTGTGTGTGCACGCGCGTGTGTCTTCCCCAGGACCACCATACCCTGTGTATGTATGCA TGTTTTTGTAAAAAAGAAAAAAAAGAAAAGAAAAAAATCTGAACAATAAATGTTTTATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 74-2203, + strand, RNAz p=0.98966 | |
| 1049-1168, + strand, RNAz p=0.555808 | |
| 1264-1457, - strand, RNAz p=0.584483 | |
| 1604-1831, + strand, RNAz p=0.994016 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 74-2203, + strand, RNAz p=0.98966 | |
| 1049-1168, + strand, RNAz p=0.555808 | |
| 1264-1457, - strand, RNAz p=0.584483 | |
| 1604-1831, + strand, RNAz p=0.994016 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK026767, + | |
| 5' of AK026767, + |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 68-191, gnl|bosTau2|chr5 (25318530-25318407) | |
| 68-191, gnl|Hg17|chr12 (46471758-46471635) | |
| 68-191, gnl|Mm7|chr15 (97803127-97803004) | |
| 240-348, gnl|bosTau2|chr5 (24798158-24798050) | |
| 240-348, gnl|Hg17|chr12 (46469971-46469863) | |
| 240-348, gnl|Mm7|chr15 (97801378-97801270) | |
| 488-614, gnl|bosTau2|chr19 (38197330-38197456) | |
| 488-614, gnl|canFam2|chr9 (22614573-22614471) | |
| 488-614, gnl|danRer3|chr3 (16626771-16626873) | |
| 488-614, gnl|echTel1|scaffold_127767 (554-452) | |
| 488-614, gnl|fr1|chrUn (243090133-243090031) | |
| 488-614, gnl|galGal2|chrUn (6477676-6477574) | |
| 488-614, gnl|hg17|chr17 (39513655-39513757) | |
| 488-614, gnl|Hg17|chr17 (39513780-39513655) | |
| 488-614, gnl|loxAfr1|scaffold_45419 (19325-19223) | |
| 488-614, gnl|mm7|chr11 (102306703-102306805) | |
| 488-614, gnl|Mm7|chr11 (102306829-102306703) | |
| 488-614, gnl|monDom2|scaffold_18 (42729373-42729271) | |
| 488-614, gnl|oryCun1|scaffold_198201 (91589-91487) | |
| 488-614, gnl|panTro1|chr19 (42699937-42700039) | |
| 488-614, gnl|rheMac2|chr16 (54163599-54163701) | |
| 488-614, gnl|rn3|chr10 (91282820-91282922) | |
| 488-614, gnl|tetNig1|chrUn_random (37723153-37723254) | |
| 488-614, gnl|xenTro1|scaffold_316 (815134-815033) | |
| 708-831, gnl|bosTau2|chr19 (38197967-38198090) | |
| 708-831, gnl|canFam2|chr9 (22615224-22615088) | |
| 708-831, gnl|danRer3|chr3 (16625576-16625705) | |
| 708-831, gnl|dasNov1|scaffold_48061 (14683-14814) | |
| 708-831, gnl|echTel1|scaffold_220785 (1284-1153) | |
| 708-831, gnl|fr1|chrUn (243090776-243090639) | |
| 708-831, gnl|galGal2|chrUn (6478323-6478193) | |
| 708-831, gnl|hg17|chr17 (39512994-39513131) | |
| 708-831, gnl|Hg17|chr17 (39513122-39512999) | |
| 708-831, gnl|loxAfr1|scaffold_4197 (58257-58394) | |
| 708-831, gnl|mm7|chr11 (102306091-102306228) | |
| 708-831, gnl|Mm7|chr11 (102306219-102306096) | |
| 708-831, gnl|monDom2|scaffold_18 (42730016-42729885) | |
| 708-831, gnl|oryCun1|scaffold_198201 (92110-91973) | |
| 708-831, gnl|panTro1|chr19 (42699276-42699413) | |
| 708-831, gnl|rheMac2|chr16 (54162938-54163075) | |
| 708-831, gnl|rn3|chr10 (91282188-91282325) | |
| 708-831, gnl|tetNig1|chr3 (2335020-2334898) | |
| 708-831, gnl|xenTro1|scaffold_316 (815627-815493) | |
| 1049-1188, gnl|bosTau2|chr5 (24791146-24791007) | |
| 1049-1188, gnl|Hg17|chr12 (46464267-46464128) | |
| 1049-1188, gnl|Mm7|chr15 (97794640-97794504) | |
| 1189-2221, gnl|bosTau2|chr5 (24790862-24789811) | |
| 1189-2221, gnl|Hg17|chr12 (46463935-46462910) | |
| 1189-2221, gnl|Mm7|chr15 (97794316-97793373) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-191, gnl|bosTau2|chr5 (25318530-25318407) | |
| 68-191, gnl|Hg17|chr12 (46471758-46471635) | |
| 68-191, gnl|Mm7|chr15 (97803127-97803004) | |
| 240-348, gnl|bosTau2|chr5 (24798158-24798050) | |
| 240-348, gnl|Hg17|chr12 (46469971-46469863) | |
| 240-348, gnl|Mm7|chr15 (97801378-97801270) | |
| 488-614, gnl|bosTau2|chr19 (38197330-38197456) | |
| 488-614, gnl|canFam2|chr9 (22614573-22614471) | |
| 488-614, gnl|danRer3|chr3 (16626771-16626873) | |
| 488-614, gnl|echTel1|scaffold_127767 (554-452) | |
| 488-614, gnl|fr1|chrUn (243090133-243090031) | |
| 488-614, gnl|galGal2|chrUn (6477676-6477574) | |
| 488-614, gnl|hg17|chr17 (39513655-39513757) | |
| 488-614, gnl|Hg17|chr17 (39513780-39513655) | |
| 488-614, gnl|loxAfr1|scaffold_45419 (19325-19223) | |
| 488-614, gnl|mm7|chr11 (102306703-102306805) | |
| 488-614, gnl|Mm7|chr11 (102306829-102306703) | |
| 488-614, gnl|monDom2|scaffold_18 (42729373-42729271) | |
| 488-614, gnl|oryCun1|scaffold_198201 (91589-91487) | |
| 488-614, gnl|panTro1|chr19 (42699937-42700039) | |
| 488-614, gnl|rheMac2|chr16 (54163599-54163701) | |
| 488-614, gnl|rn3|chr10 (91282820-91282922) | |
| 488-614, gnl|tetNig1|chrUn_random (37723153-37723254) | |
| 488-614, gnl|xenTro1|scaffold_316 (815134-815033) | |
| 708-831, gnl|bosTau2|chr19 (38197967-38198090) | |
| 708-831, gnl|canFam2|chr9 (22615224-22615088) | |
| 708-831, gnl|danRer3|chr3 (16625576-16625705) | |
| 708-831, gnl|dasNov1|scaffold_48061 (14683-14814) | |
| 708-831, gnl|echTel1|scaffold_220785 (1284-1153) | |
| 708-831, gnl|fr1|chrUn (243090776-243090639) | |
| 708-831, gnl|galGal2|chrUn (6478323-6478193) | |
| 708-831, gnl|hg17|chr17 (39512994-39513131) | |
| 708-831, gnl|Hg17|chr17 (39513122-39512999) | |
| 708-831, gnl|loxAfr1|scaffold_4197 (58257-58394) | |
| 708-831, gnl|mm7|chr11 (102306091-102306228) | |
| 708-831, gnl|Mm7|chr11 (102306219-102306096) | |
| 708-831, gnl|monDom2|scaffold_18 (42730016-42729885) | |
| 708-831, gnl|oryCun1|scaffold_198201 (92110-91973) | |
| 708-831, gnl|panTro1|chr19 (42699276-42699413) | |
| 708-831, gnl|rheMac2|chr16 (54162938-54163075) | |
| 708-831, gnl|rn3|chr10 (91282188-91282325) | |
| 708-831, gnl|tetNig1|chr3 (2335020-2334898) | |
| 708-831, gnl|xenTro1|scaffold_316 (815627-815493) | |
| 1049-1188, gnl|bosTau2|chr5 (24791146-24791007) | |
| 1049-1188, gnl|Hg17|chr12 (46464267-46464128) | |
| 1049-1188, gnl|Mm7|chr15 (97794640-97794504) | |
| 1189-2221, gnl|bosTau2|chr5 (24790862-24789811) | |
| 1189-2221, gnl|Hg17|chr12 (46463935-46462910) | |
| 1189-2221, gnl|Mm7|chr15 (97794316-97793373) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cje (0.330469) | |
| fce (0.271592) | |
| cov (0.264306) | |
| med (0.232504) | |
| ece (0.229305) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| duo (0.172801) | |
| che (0.136314) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.330469) | |
| fce (0.271592) | |
| cov (0.264306) | |
| med (0.232504) | |
| ece (0.229305) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| duo (0.172801) | |
| che (0.136314) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) |