Non-Coding RNA Search

Ss1.1-Pig3-SRG8014N19.5

Sequence:


               
               GGTCCTGGTTGCCAAGGAAATCTGAGTTCAGGCTGTAGAGACACCAGGAGGCTGGGATTG
CAGCCCCTGTCTTGTAGGGCACACACACGCTCCCTGCACAGCTGGCCTAGGCCTGCCCAC
TGGCCCCGGCTCTGCCCTGGGCCAGTGGGGCCCCTCCTTCCCGGGGGACAGAGAGCCATT
GTCCGCCAGGGTCACTGTGCTTTTCTCATTATGACCCGTATTCTTAGCAACTCCTGCTCT
AATCTCAACCCTTTCCTCTTTTAGTTGGAAGACTTTCATCTGGTCCTTTGCAGTTAGCCA
AGGACACTCCCATGTCCTTTCTCATTGGGCCCTTGGCCCCATTCTGGCGGGAGTTGGGGG
GGGGGGGTCTGCACCGCAGAGAAAGGAAATCAGAGGTTCCAGGAGCAGCAGCTCTCAAGT
TGAGTGGCAGCTCTAGGACCCCAGGCCTGGGCCCCCCCCTCAGCTCAGCCCTCCCTCAGC
TCAGCTCCTCTGGCCTCAGATGTTCCTTGGGCAGGTGTACCGCGGGTCAGCCAGGAGCCT
TTTCTTTCTGGGTCAGAGCCTTCCCTTGGCCCCTGCTCACCTCTAGAGAGTCTCCGAGAT
GCCCCCCTCCCTCAGTTTCCCCTCATCATCCTGCCTCTGCCTCCCTATCCAGCCACAGCC
TCTGGTACCAACTCTAGCAATACCGCCAGAATAGAGTTCCCTGCCCCTTGACACCTGCAG
GTTCATGCCTCTGTGCCTTTGCTCATGCTCTTTCTTCAGACTGGAATGCCTTTCTCACTG
CTCCTCCTGCCTTGTCTGCCTGGCAAACACCTATTCATCTCTCACAATCCCCCTCAAAGA
CCGCCTCCTCCAGGAAGACTGCCTCCATGCCCCTCTCCCTCCAGGCTACCTCTGCTCCTT
GTAAATGCTTCTCTTGCAGCACTTATCACACTGTATTTTACTTGTTTACACGTTTGTCGC
CCCTTCGAGACTGTGAACCCTTCAGGGCATGGACTGTATCTTATGCATCTCTGTATTTCT
GCGCCTAGCACGGTGCCTGGCACGCAGTAGGCGCTCAATAAATGTTGAATGAATGAATGA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCCTGGTTGCCAAGGAAATCTGAGTTCAGGCTGTAGAGACACCAGGAGGCTGGGATTG
CAGCCCCTGTCTTGTAGGGCACACACACGCTCCCTGCACAGCTGGCCTAGGCCTGCCCAC
TGGCCCCGGCTCTGCCCTGGGCCAGTGGGGCCCCTCCTTCCCGGGGGACAGAGAGCCATT
GTCCGCCAGGGTCACTGTGCTTTTCTCATTATGACCCGTATTCTTAGCAACTCCTGCTCT
AATCTCAACCCTTTCCTCTTTTAGTTGGAAGACTTTCATCTGGTCCTTTGCAGTTAGCCA
AGGACACTCCCATGTCCTTTCTCATTGGGCCCTTGGCCCCATTCTGGCGGGAGTTGGGGG
GGGGGGGTCTGCACCGCAGAGAAAGGAAATCAGAGGTTCCAGGAGCAGCAGCTCTCAAGT
TGAGTGGCAGCTCTAGGACCCCAGGCCTGGGCCCCCCCCTCAGCTCAGCCCTCCCTCAGC
TCAGCTCCTCTGGCCTCAGATGTTCCTTGGGCAGGTGTACCGCGGGTCAGCCAGGAGCCT
TTTCTTTCTGGGTCAGAGCCTTCCCTTGGCCCCTGCTCACCTCTAGAGAGTCTCCGAGAT
GCCCCCCTCCCTCAGTTTCCCCTCATCATCCTGCCTCTGCCTCCCTATCCAGCCACAGCC
TCTGGTACCAACTCTAGCAATACCGCCAGAATAGAGTTCCCTGCCCCTTGACACCTGCAG
GTTCATGCCTCTGTGCCTTTGCTCATGCTCTTTCTTCAGACTGGAATGCCTTTCTCACTG
CTCCTCCTGCCTTGTCTGCCTGGCAAACACCTATTCATCTCTCACAATCCCCCTCAAAGA
CCGCCTCCTCCAGGAAGACTGCCTCCATGCCCCTCTCCCTCCAGGCTACCTCTGCTCCTT
GTAAATGCTTCTCTTGCAGCACTTATCACACTGTATTTTACTTGTTTACACGTTTGTCGC
CCCTTCGAGACTGTGAACCCTTCAGGGCATGGACTGTATCTTATGCATCTCTGTATTTCT
GCGCCTAGCACGGTGCCTGGCACGCAGTAGGCGCTCAATAAATGTTGAATGAATGAATGA
AAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               92-228, - strand, RNAz p=0.975469
               

               
               350-466, - strand, RNAz p=0.677825
               

               
               534-651, - strand, RNAz p=0.60639
               

               
               763-874, - strand, RNAz p=0.996856

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-228, - strand, RNAz p=0.975469
               

               
               350-466, - strand, RNAz p=0.677825
               

               
               534-651, - strand, RNAz p=0.60639
               

               
               763-874, - strand, RNAz p=0.996856

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               38-490, gnl|bosTau2|chr2 (59714629-59714180)
               

               
               38-490, gnl|canFam2|chr37 (28006884-28007360)
               

               
               38-490, gnl|echTel1|scaffold_291868 (244-742)
               

               
               38-490, gnl|hg17|chr2 (219035747-219036256)
               

               
               38-490, gnl|Hg17|chr2 (219035883-219036387)
               

               
               38-490, gnl|loxAfr1|scaffold_71005 (8746-8112)
               

               
               38-490, gnl|mm7|chr1 (74592146-74592628)
               

               
               38-490, gnl|Mm7|chr1 (74592281-74592748)
               

               
               38-490, gnl|panTro1|chr13 (109193276-109193785)
               

               
               38-490, gnl|rheMac2|chr12 (82168658-82169164)
               

               
               38-490, gnl|rn3|chr9 (73843469-73843939)
               


               
               499-1080, gnl|bosTau2|chr2 (59714133-59713546)
               

               
               499-1080, gnl|Hg17|chr2 (219036434-219037010)
               

               
               499-1080, gnl|Mm7|chr1 (74592791-74593354)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-490, gnl|bosTau2|chr2 (59714629-59714180)
               

               
               38-490, gnl|canFam2|chr37 (28006884-28007360)
               

               
               38-490, gnl|echTel1|scaffold_291868 (244-742)
               

               
               38-490, gnl|hg17|chr2 (219035747-219036256)
               

               
               38-490, gnl|Hg17|chr2 (219035883-219036387)
               

               
               38-490, gnl|loxAfr1|scaffold_71005 (8746-8112)
               

               
               38-490, gnl|mm7|chr1 (74592146-74592628)
               

               
               38-490, gnl|Mm7|chr1 (74592281-74592748)
               

               
               38-490, gnl|panTro1|chr13 (109193276-109193785)
               

               
               38-490, gnl|rheMac2|chr12 (82168658-82169164)
               

               
               38-490, gnl|rn3|chr9 (73843469-73843939)
               


               
               499-1080, gnl|bosTau2|chr2 (59714133-59713546)
               

               
               499-1080, gnl|Hg17|chr2 (219036434-219037010)
               

               
               499-1080, gnl|Mm7|chr1 (74592791-74593354)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

	92-228, - strand, RNAz p=0.975469
	350-466, - strand, RNAz p=0.677825
	534-651, - strand, RNAz p=0.60639
	763-874, - strand, RNAz p=0.996856

	38-490, gnl\|bosTau2\|chr2 (59714629-59714180)
	38-490, gnl\|canFam2\|chr37 (28006884-28007360)
	38-490, gnl\|echTel1\|scaffold_291868 (244-742)
	38-490, gnl\|hg17\|chr2 (219035747-219036256)
	38-490, gnl\|Hg17\|chr2 (219035883-219036387)
	38-490, gnl\|loxAfr1\|scaffold_71005 (8746-8112)
	38-490, gnl\|mm7\|chr1 (74592146-74592628)
	38-490, gnl\|Mm7\|chr1 (74592281-74592748)
	38-490, gnl\|panTro1\|chr13 (109193276-109193785)
	38-490, gnl\|rheMac2\|chr12 (82168658-82169164)
	38-490, gnl\|rn3\|chr9 (73843469-73843939)

	499-1080, gnl\|bosTau2\|chr2 (59714133-59713546)
	499-1080, gnl\|Hg17\|chr2 (219036434-219037010)
	499-1080, gnl\|Mm7\|chr1 (74592791-74593354)