Non-Coding RNA Search

Ss1.1-Pig3-SRG8015A01.3

Sequence:


               
               ACCCCTCCTAAAGATACTACGCGGACTTCCTGTACCCCCCGGAGCTGAGCGCTCGTTTAA
GTGACCTGACGCTAGAGGGGGAGCCGTCCTCCGGTTCCGACCCCCAGACCCCGGGGACAC
TGGTCTGACCCCTTCCCATATGCCCCTTATCGGCCCGGTCATGACTCCAGTCTGGGGAGC
ACCCAGCGGATCTCGCTGAGCCCTGGGGTGTGGCTGCGCTTGGTCCTGGGGCGGGGGGCA
CCAACCTGATCTCCCAAGGCCCCCGGCTCCCCGTGGGCCCCCAAAGGTGTCTGACACCCT
GCTTCTGCTCTCACGCTGTGCTGGGGACTGGGGGCCCTGAGCCGGCTGGAAAGAGAGGGC
GGCTGATGTAATGGGGCCTCCACGCCCCTTCCTCCATTCCTGTTTACAGTCGTGATTTAG
GTATTCACCGTCTTCCCCCCAACACTAGCCGTTTTATAAAAAGGGAAACTGTGATCTCGT
CCTGGTTGGGTCCCTTCCTGTCCCTGTGCCCAACCTGTGTCCCGTTCAGGAACCCCCCTT
CCCCAAAACAGACCATAGAGGGTCTCAGGGCCCAGCTTGGGGCAGCCAGGAGACTCCAGT
GTGAACAGAACTCCCTGCCCGCTCCCCCCCCACCCCCACCAGGGCCGTTTTCCTTGGGGG
ACGTGGGCTCTCTGCCCACGTCTGGAAGGACTAAAGTCTGGGTGGAGGACTTGGGTTCAT
TTCCCCTCCCCACCCCCAGGGTTCCTGTCTGCCTGTCTGTGCCCGCTGCCTCTGCCCACA
GGGTGAAATGGCCCAGCCTTTGGTGGCAGCCTCTGCCCCAACTCTTCCCCAGTCAGGAGG
CTCTGCGGGAGGGTCCAAAGGGCAGAGCCACTGGGCGTGTTGTGTCCTGGGATGCTGCGG
TGGTGGAACCTGGCATCTGGTAGATGCCAGTGAAGTCCTCAGGTGACGTCTGGCCACAGC
TACGTCACGTCTTCCTTGGCTTTCCTTCCATCCACCACTTTTTAAACAAATCCACACAAG
CTGTGTTTTCTATGATACCTGTCTGTGACTTTCCGGAGCTGGGGGCTCCCCTACCCCCTT
TACCTGGTGTTAAACTTTTCTTTTTGTACCAATGGATCTGGGCCCAAGACACTACCCACA
CTGGAAGGGGATTTTTATAATAAATGTGTAAACTGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCTCCTAAAGATACTACGCGGACTTCCTGTACCCCCCGGAGCTGAGCGCTCGTTTAA
GTGACCTGACGCTAGAGGGGGAGCCGTCCTCCGGTTCCGACCCCCAGACCCCGGGGACAC
TGGTCTGACCCCTTCCCATATGCCCCTTATCGGCCCGGTCATGACTCCAGTCTGGGGAGC
ACCCAGCGGATCTCGCTGAGCCCTGGGGTGTGGCTGCGCTTGGTCCTGGGGCGGGGGGCA
CCAACCTGATCTCCCAAGGCCCCCGGCTCCCCGTGGGCCCCCAAAGGTGTCTGACACCCT
GCTTCTGCTCTCACGCTGTGCTGGGGACTGGGGGCCCTGAGCCGGCTGGAAAGAGAGGGC
GGCTGATGTAATGGGGCCTCCACGCCCCTTCCTCCATTCCTGTTTACAGTCGTGATTTAG
GTATTCACCGTCTTCCCCCCAACACTAGCCGTTTTATAAAAAGGGAAACTGTGATCTCGT
CCTGGTTGGGTCCCTTCCTGTCCCTGTGCCCAACCTGTGTCCCGTTCAGGAACCCCCCTT
CCCCAAAACAGACCATAGAGGGTCTCAGGGCCCAGCTTGGGGCAGCCAGGAGACTCCAGT
GTGAACAGAACTCCCTGCCCGCTCCCCCCCCACCCCCACCAGGGCCGTTTTCCTTGGGGG
ACGTGGGCTCTCTGCCCACGTCTGGAAGGACTAAAGTCTGGGTGGAGGACTTGGGTTCAT
TTCCCCTCCCCACCCCCAGGGTTCCTGTCTGCCTGTCTGTGCCCGCTGCCTCTGCCCACA
GGGTGAAATGGCCCAGCCTTTGGTGGCAGCCTCTGCCCCAACTCTTCCCCAGTCAGGAGG
CTCTGCGGGAGGGTCCAAAGGGCAGAGCCACTGGGCGTGTTGTGTCCTGGGATGCTGCGG
TGGTGGAACCTGGCATCTGGTAGATGCCAGTGAAGTCCTCAGGTGACGTCTGGCCACAGC
TACGTCACGTCTTCCTTGGCTTTCCTTCCATCCACCACTTTTTAAACAAATCCACACAAG
CTGTGTTTTCTATGATACCTGTCTGTGACTTTCCGGAGCTGGGGGCTCCCCTACCCCCTT
TACCTGGTGTTAAACTTTTCTTTTTGTACCAATGGATCTGGGCCCAAGACACTACCCACA
CTGGAAGGGGATTTTTATAATAAATGTGTAAACTGAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               475-736, + strand, RNAz p=0.999929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-736, + strand, RNAz p=0.999929

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               596-732, - strand, RNAmicro p=0.999941

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               596-732, - strand, RNAmicro p=0.999941

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC008769, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC008769, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1177, gnl|bosTau2|chrX (25906578-25907760)
               

               
               1-1177, gnl|Hg17|chrX (48682316-48683755)
               

               
               1-1177, gnl|Mm7|chrX (6165900-6164864)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1177, gnl|bosTau2|chrX (25906578-25907760)
               

               
               1-1177, gnl|Hg17|chrX (48682316-48683755)
               

               
               1-1177, gnl|Mm7|chrX (6165900-6164864)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ill (0.175593)
               

               
               duo (0.172801)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	1-1177, gnl\|bosTau2\|chrX (25906578-25907760)
	1-1177, gnl\|Hg17\|chrX (48682316-48683755)
	1-1177, gnl\|Mm7\|chrX (6165900-6164864)