Non-Coding RNA Search

Ss1.1-Pig3-SRG8015B09.5

Sequence:


               
               AAGAATAAGAAGCCATCATTGATGTTAATTAACGCGTTTAGATGGGCCAGTTGAAACAGC
TTCCTAAGTTTGAATTAATTGTAACTGGAGTCGTCCTCGTCCTCGTCTCACACTCGTGCG
CTCCCTTTCCCGCTGTCAACAAAAGGCGTTACTAAGCAAAACCACCGAAATTCCAGAGTT
GGTGATTTTAAATAGGCCCCCATTGAAAGGAAGCTTGGCCGTGGGGCGAAAGTCACCGGC
GTCAGCCGGCCTGTCCCTGTGCCCGTCTGCAGCCGTCGCGGCGCAGTCCGTTACTCAGAC
AGTAACCACATAATGACCTGTGCAAACCAGCCTCCGGCTAATGAGCTGTGAATTTACACA
GAGGCCATTGGAAACGGGTCAGCCCGTTTAGGATTAGTGCATCTCAAATTATTAACCCAA
CATCACTCCATTTCAGAGTAAAATATTCCACCGGTGGTTTGATTTATCGACCCCTCCACT
GCCACGGAGCATCCCCGGATCGCAGGCCTGTGCCTGCAGGCTGTGAAACTGTGGCTCAGA
ACCGCCCTCGGTGGTGTAAGTGTGGAGCAGGTCGTCACAGGGGACGTTGCTGTGTCCTCA
CCTGCCCTCCGTGCGGTGCTCGAATGTATTCCTGGGCCTGTGGAGCCGCCCGGGAAGGTG
AGGCTAGCTGGAACCTGAAGCCCTTCACCTTCTCCTTGGTCCTGAGACACCGGGATACTG
TTGATGATTCTTTGGGTCATTTTGGATGGCTCTTAAAATGTTTTTAAAAAGCACGACCTC
GTCACCTGTGCTACATTTTATTTGGGCAAGTCCCATACAATGACTCTCTGGAATTGACTT
TGGAGTTACTTCCAGAAATTTAAGCTCCAGTCCAGAGCTGTCCAAACAGACCGTGGACTT
AAAGCCCAGATCCCCGCCCAGCCTTCCCTTCCAAGTGGGTTACGATGCCAGGCAGTTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATAAGAAGCCATCATTGATGTTAATTAACGCGTTTAGATGGGCCAGTTGAAACAGC
TTCCTAAGTTTGAATTAATTGTAACTGGAGTCGTCCTCGTCCTCGTCTCACACTCGTGCG
CTCCCTTTCCCGCTGTCAACAAAAGGCGTTACTAAGCAAAACCACCGAAATTCCAGAGTT
GGTGATTTTAAATAGGCCCCCATTGAAAGGAAGCTTGGCCGTGGGGCGAAAGTCACCGGC
GTCAGCCGGCCTGTCCCTGTGCCCGTCTGCAGCCGTCGCGGCGCAGTCCGTTACTCAGAC
AGTAACCACATAATGACCTGTGCAAACCAGCCTCCGGCTAATGAGCTGTGAATTTACACA
GAGGCCATTGGAAACGGGTCAGCCCGTTTAGGATTAGTGCATCTCAAATTATTAACCCAA
CATCACTCCATTTCAGAGTAAAATATTCCACCGGTGGTTTGATTTATCGACCCCTCCACT
GCCACGGAGCATCCCCGGATCGCAGGCCTGTGCCTGCAGGCTGTGAAACTGTGGCTCAGA
ACCGCCCTCGGTGGTGTAAGTGTGGAGCAGGTCGTCACAGGGGACGTTGCTGTGTCCTCA
CCTGCCCTCCGTGCGGTGCTCGAATGTATTCCTGGGCCTGTGGAGCCGCCCGGGAAGGTG
AGGCTAGCTGGAACCTGAAGCCCTTCACCTTCTCCTTGGTCCTGAGACACCGGGATACTG
TTGATGATTCTTTGGGTCATTTTGGATGGCTCTTAAAATGTTTTTAAAAAGCACGACCTC
GTCACCTGTGCTACATTTTATTTGGGCAAGTCCCATACAATGACTCTCTGGAATTGACTT
TGGAGTTACTTCCAGAAATTTAAGCTCCAGTCCAGAGCTGTCCAAACAGACCGTGGACTT
AAAGCCCAGATCCCCGCCCAGCCTTCCCTTCCAAGTGGGTTACGATGCCAGGCAGTTGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               278-477, - strand, RNAz p=0.961611

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-477, - strand, RNAz p=0.961611

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-956, gnl|bosTau2|chr13 (38116398-38115419)
               

               
               1-956, gnl|Hg17|chr20 (56685353-56686329)
               

               
               1-956, gnl|Mm7|chr2 (173841963-173842928)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-956, gnl|bosTau2|chr13 (38116398-38115419)
               

               
               1-956, gnl|Hg17|chr20 (56685353-56686329)
               

               
               1-956, gnl|Mm7|chr2 (173841963-173842928)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               liv (0.146284)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               hyp (0.142837)

	1-956, gnl\|bosTau2\|chr13 (38116398-38115419)
	1-956, gnl\|Hg17\|chr20 (56685353-56686329)
	1-956, gnl\|Mm7\|chr2 (173841963-173842928)