Non-Coding RNA Search

Ss1.1-Pig3-SRG8015B10.5

Sequence:


               
               CCTAAAAATAAGAAAAAAGAAAGCTAAATATGATAGTAAACTGTCTTTGCTTATGTCCTG
CCAGATGTTTAACCTCAAAATAAATTAAAAGTAGGTACAATGATGATGATGAAAATGAAT
AAACAATTAAAGTGATAGTTTTATTTGAAATTAATGACTAGAATAAGTCATCATTTTTTC
AGCTCTATAGCACAGCTGGTTACATTGAATATTTTCCCTCTATTATGCTGTTAATTATAT
AGTAATGTATCAAAGAAGAAATAGATAAGAAGTTTCTTTTCATTTCTTGTTGGTTTATGA
AAAAATCTTTTTACACATAAATGCTTGAATGTTCTTGTTCAGAATGACCACATAATTATT
GCTTATGAAAAGACACCAATTAGTAAAAAAAAAAAAAAAAAGTATTTATAATAATCAGAA
TCAAATGTCATTTTTTTTCTTCTAAATGTAAATGAAAAAAAAATTGAAGGTGGAAAAATA
TGTCATGTTGATTCAGGATGGGCTATATTAACAGTAGAAATTTCAGTGGTCAGCATCTTT
ATGCATCTTTAAACTGCTAATTTTTTTACAGTTATTTAAAAGTGTGTAAATTTCATTTAT
GATCGTCTGAGAATAAAACAGACTCAGTCATTTGTTAATATGTTTATTAGAATGTTTTCG
TTTCAGGCAGGTCAGAAGCAGCTGTATAGCATTATCTTATTCTATGTTAGGGCTGTCTAA
ATCCCCAGCCTCAGTGTTAATTCAAGGAAGAATTAGCATTTCTGTAATTTTTTTTCCCCA
TTTAAAGCTCTATGTGCATTTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAAAAATAAGAAAAAAGAAAGCTAAATATGATAGTAAACTGTCTTTGCTTATGTCCTG
CCAGATGTTTAACCTCAAAATAAATTAAAAGTAGGTACAATGATGATGATGAAAATGAAT
AAACAATTAAAGTGATAGTTTTATTTGAAATTAATGACTAGAATAAGTCATCATTTTTTC
AGCTCTATAGCACAGCTGGTTACATTGAATATTTTCCCTCTATTATGCTGTTAATTATAT
AGTAATGTATCAAAGAAGAAATAGATAAGAAGTTTCTTTTCATTTCTTGTTGGTTTATGA
AAAAATCTTTTTACACATAAATGCTTGAATGTTCTTGTTCAGAATGACCACATAATTATT
GCTTATGAAAAGACACCAATTAGTAAAAAAAAAAAAAAAAAGTATTTATAATAATCAGAA
TCAAATGTCATTTTTTTTCTTCTAAATGTAAATGAAAAAAAAATTGAAGGTGGAAAAATA
TGTCATGTTGATTCAGGATGGGCTATATTAACAGTAGAAATTTCAGTGGTCAGCATCTTT
ATGCATCTTTAAACTGCTAATTTTTTTACAGTTATTTAAAAGTGTGTAAATTTCATTTAT
GATCGTCTGAGAATAAAACAGACTCAGTCATTTGTTAATATGTTTATTAGAATGTTTTCG
TTTCAGGCAGGTCAGAAGCAGCTGTATAGCATTATCTTATTCTATGTTAGGGCTGTCTAA
ATCCCCAGCCTCAGTGTTAATTCAAGGAAGAATTAGCATTTCTGTAATTTTTTTTCCCCA
TTTAAAGCTCTATGTGCATTTGGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-804, gnl|bosTau2|chr6 (45421648-45422456)
               

               
               2-804, gnl|Hg17|chr4 (66014944-66014125)
               

               
               2-804, gnl|Mm7|chr5 (83991283-83990476)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-804, gnl|bosTau2|chr6 (45421648-45422456)
               

               
               2-804, gnl|Hg17|chr4 (66014944-66014125)
               

               
               2-804, gnl|Mm7|chr5 (83991283-83990476)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.314416)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ecc (0.115035)

	2-804, gnl\|bosTau2\|chr6 (45421648-45422456)
	2-804, gnl\|Hg17\|chr4 (66014944-66014125)
	2-804, gnl\|Mm7\|chr5 (83991283-83990476)