Non-Coding RNA Search

Ss1.1-Pig3-SRG8015B14.5

Sequence:


               
               TATGCCATCACAGTGTATCGGCTGGATGATTCTGATAGAGAAGGGTCTATAAAGAGCTTC
TCTCTGGGCCCCCTGAGGAAAGCTGTTACCCTGAATCCAGATAATTCCTACATCAAGGTT
TTTCTGGCGCTGAAGCTTCAAGATGTGCATGCAGAAGCTGAAGGGGAAAAGTATATTGAA
GAAATCCTGGACCAGATATCATCCCAACCTTATGTCCTCCGTTATGCAGCCAAATTCTAT
AGGAGAAAAAATTCCTGGGACAAAGCTCTTGAACTTTTGAAAAAGGCCTTGGAGGTGACA
CCAACCTCTTCTTTCCTGAATCACCAAATGGGACTTTGCTATAGGGCACAAATGATCCAA
ATCAAGAAGGCCACTCGAAACAGACCTAAAGGAAAGGATAAACTGAAAGTGGATGAGCTG
ATTACATCTGCTATATCTCATTTCACAGCAGCCGTGTAGCGAGACTCTATGTTTGCATTT
GCCTACACGGACCTGGCCAACATGTATGCTGAGGGAGGCCAGTACAACAATGCTGAAGAC
ATTTTTCAGAAAGCCCTTCGTCTGGAGAACATAACTGATGATCACAAACATCAAATCCAC
TACCACTATGGTCGCTTTCAGGAATTTCACCGTAAATCAGAAAATACAGCCATCCACCAT
TATTTAGAAGCCTTAAAAGTCAAAGACAGGTCTTCTCTGCGTACCAAACTGACAAGTGCT
CTGAAGAAACTGGCTACCAAGAGACTTGCTCACAATCCTTCAGATGTGCAGAGTTTAAGT
GCCCTAGGGTTTGTTTACAAGCTGGAAGGAGAAAAAAGGCAGGCTGCTGAGTACTATGAG
CGGGCCCAAAAGATAGATCCAGAAAATGCAGAATTTCTTACTGCTCTCTGTGAGCTTCGA
CTTTCCATTTAAATACATATTCTAGGAAATTAGTTCTGAGCGTTTCTCTCCATTTTGGGT
TGTTACATTTTTGTTTATTGTTTTAACCCATTCTTCATTATAAAGTTCATTTTTATTGAA
TGATTATTGTGTACCAAGCATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGCCATCACAGTGTATCGGCTGGATGATTCTGATAGAGAAGGGTCTATAAAGAGCTTC
TCTCTGGGCCCCCTGAGGAAAGCTGTTACCCTGAATCCAGATAATTCCTACATCAAGGTT
TTTCTGGCGCTGAAGCTTCAAGATGTGCATGCAGAAGCTGAAGGGGAAAAGTATATTGAA
GAAATCCTGGACCAGATATCATCCCAACCTTATGTCCTCCGTTATGCAGCCAAATTCTAT
AGGAGAAAAAATTCCTGGGACAAAGCTCTTGAACTTTTGAAAAAGGCCTTGGAGGTGACA
CCAACCTCTTCTTTCCTGAATCACCAAATGGGACTTTGCTATAGGGCACAAATGATCCAA
ATCAAGAAGGCCACTCGAAACAGACCTAAAGGAAAGGATAAACTGAAAGTGGATGAGCTG
ATTACATCTGCTATATCTCATTTCACAGCAGCCGTGTAGCGAGACTCTATGTTTGCATTT
GCCTACACGGACCTGGCCAACATGTATGCTGAGGGAGGCCAGTACAACAATGCTGAAGAC
ATTTTTCAGAAAGCCCTTCGTCTGGAGAACATAACTGATGATCACAAACATCAAATCCAC
TACCACTATGGTCGCTTTCAGGAATTTCACCGTAAATCAGAAAATACAGCCATCCACCAT
TATTTAGAAGCCTTAAAAGTCAAAGACAGGTCTTCTCTGCGTACCAAACTGACAAGTGCT
CTGAAGAAACTGGCTACCAAGAGACTTGCTCACAATCCTTCAGATGTGCAGAGTTTAAGT
GCCCTAGGGTTTGTTTACAAGCTGGAAGGAGAAAAAAGGCAGGCTGCTGAGTACTATGAG
CGGGCCCAAAAGATAGATCCAGAAAATGCAGAATTTCTTACTGCTCTCTGTGAGCTTCGA
CTTTCCATTTAAATACATATTCTAGGAAATTAGTTCTGAGCGTTTCTCTCCATTTTGGGT
TGTTACATTTTTGTTTATTGTTTTAACCCATTCTTCATTATAAAGTTCATTTTTATTGAA
TGATTATTGTGTACCAAGCATCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879951|ref|XP_593047.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879951|ref|XP_593047.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1044, gnl|bosTau2|chr26 (7289320-7288280)
               

               
               1-1044, gnl|Hg17|chr10 (91167474-91168522)
               

               
               1-1044, gnl|Mm7|chr19 (34295804-34294950)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1044, gnl|bosTau2|chr26 (7289320-7288280)
               

               
               1-1044, gnl|Hg17|chr10 (91167474-91168522)
               

               
               1-1044, gnl|Mm7|chr19 (34295804-34294950)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               liv (0.292569)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	1-1044, gnl\|bosTau2\|chr26 (7289320-7288280)
	1-1044, gnl\|Hg17\|chr10 (91167474-91168522)
	1-1044, gnl\|Mm7\|chr19 (34295804-34294950)

	liv (0.292569)
	duo (0.172801)
	ski (0.146735)
	hlv (0.139256)
	ova (0.129132)
	cty (0.10408)