Ss1.1-Pig3-SRG8015F18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTGATTTTAGATCACTTGCACTAATGACCTGTCACACTTTAATGTAGCTGTGCACCAT TCTCCCAGTGATGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTACATGTTTAAACAACAGAAAGTCATAAAAGCAAAGGTCTTTTTCTGTTGTAACT AAAAGCCACTCGACCCTGATCTCATCACTGGTATTAATAAACTCTCATTCTCTAGTTTCA CAAGATATTCCTCTCTTGTTCACCATTCTTCTGAACTGGGATATATATGTACATACTGGG GAAATATGGTCATATAAAGATTGCTATGACTTTCATTGATATTGACTCTGCCCTTCTATT CTCTGAGTCAGATCAACAGTTTGGGGCCTGATCTATGACTCCAAAATATCGAGTCCATTT AATTTAGACTAGTATGATAATATGCCCAAACTTCCTACAACAAATCTAAAAACATTGGTC CAGTAGCTGTGCACAAAACAAACCATTAGATGTCTTGACTCTTGACTTTTTTGGCCAACA CTGGAATCCAAAAAAAGTCTTGCTAAATTCCAAATTGATAAACATAAACTTAGGACTCTT CAGAGAAATGGAGAATGAGAAAGGAATGATAGTCAACAGACGATTAGGCTTTATGAGCCT CCGGGCTGTTACTTATTCATGCCTCTCTTAAATAAAAGACTCAATGTCTGTGTTTGCACC GTCTGATTATCCTTGTGTTCTCATTTTCTTTCCAGTTTCCCTTCTCCTCTGAAACAAGTG GGTGAGTAATAAAAACGAATTGTATATTTGATAATTTCATTTCTTGCAGATGAGGTAGCA GAAAGGATTGGCTATAGGCATGGCTATCTGGATTAAAATCCTGACCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTGATTTTAGATCACTTGCACTAATGACCTGTCACACTTTAATGTAGCTGTGCACCAT TCTCCCAGTGATGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTACATGTTTAAACAACAGAAAGTCATAAAAGCAAAGGTCTTTTTCTGTTGTAACT AAAAGCCACTCGACCCTGATCTCATCACTGGTATTAATAAACTCTCATTCTCTAGTTTCA CAAGATATTCCTCTCTTGTTCACCATTCTTCTGAACTGGGATATATATGTACATACTGGG GAAATATGGTCATATAAAGATTGCTATGACTTTCATTGATATTGACTCTGCCCTTCTATT CTCTGAGTCAGATCAACAGTTTGGGGCCTGATCTATGACTCCAAAATATCGAGTCCATTT AATTTAGACTAGTATGATAATATGCCCAAACTTCCTACAACAAATCTAAAAACATTGGTC CAGTAGCTGTGCACAAAACAAACCATTAGATGTCTTGACTCTTGACTTTTTTGGCCAACA CTGGAATCCAAAAAAAGTCTTGCTAAATTCCAAATTGATAAACATAAACTTAGGACTCTT CAGAGAAATGGAGAATGAGAAAGGAATGATAGTCAACAGACGATTAGGCTTTATGAGCCT CCGGGCTGTTACTTATTCATGCCTCTCTTAAATAAAAGACTCAATGTCTGTGTTTGCACC GTCTGATTATCCTTGTGTTCTCATTTTCTTTCCAGTTTCCCTTCTCCTCTGAAACAAGTG GGTGAGTAATAAAAACGAATTGTATATTTGATAATTTCATTTCTTGCAGATGAGGTAGCA GAAAGGATTGGCTATAGGCATGGCTATCTGGATTAAAATCCTGACCCC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 305-409, + strand, RNAz p=0.937033 | |
| 522-629, - strand, RNAz p=0.939805 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 305-409, + strand, RNAz p=0.937033 | |
| 522-629, - strand, RNAz p=0.939805 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 118-295, gnl|bosTau2|chr20 (21233036-21232857) | |
| 118-295, gnl|canFam2|chr4 (73053636-73053474) | |
| 118-295, gnl|echTel1|scaffold_270792 (4066-3928) | |
| 118-295, gnl|hg17|chr5 (39160573-39160710) | |
| 118-295, gnl|Hg17|chr5 (39160830-39160600) | |
| 118-295, gnl|loxAfr1|scaffold_13578 (44295-44433) | |
| 118-295, gnl|mm7|chr15 (6473203-6473065) | |
| 118-295, gnl|Mm7|chr15 (6472970-6473173) | |
| 118-295, gnl|monDom2|scaffold_20 (32488997-32488844) | |
| 118-295, gnl|oryCun1|scaffold_63946 (4107-3963) | |
| 118-295, gnl|panTro1|chr4 (77585876-77585739) | |
| 118-295, gnl|rheMac2|chr6 (38948420-38948557) | |
| 118-295, gnl|rn3|chr2 (55852074-55851936) | |
| 305-695, gnl|bosTau2|chr20 (21232805-21232414) | |
| 305-695, gnl|canFam2|chr4 (73054202-73053637) | |
| 305-695, gnl|echTel1|scaffold_303276 (7956-8513) | |
| 305-695, gnl|hg17|chr5 (39160024-39160572) | |
| 305-695, gnl|Hg17|chr5 (39160589-39160199) | |
| 305-695, gnl|loxAfr1|scaffold_13578 (43727-44294) | |
| 305-695, gnl|mm7|chr15 (6473748-6473204) | |
| 305-695, gnl|Mm7|chr15 (6473183-6473604) | |
| 305-695, gnl|monDom2|scaffold_20 (32489517-32488998) | |
| 305-695, gnl|oryCun1|scaffold_63946 (4629-4108) | |
| 305-695, gnl|panTro1|chr4 (77586425-77585877) | |
| 305-695, gnl|rheMac2|chr6 (38947869-38948419) | |
| 305-695, gnl|rn3|chr2 (55852610-55852075) | |
| 733-885, gnl|bosTau2|chr20 (21232413-21232258) | |
| 733-885, gnl|Hg17|chr5 (39160160-39160015) | |
| 733-885, gnl|Mm7|chr15 (6473605-6473755) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 118-295, gnl|bosTau2|chr20 (21233036-21232857) | |
| 118-295, gnl|canFam2|chr4 (73053636-73053474) | |
| 118-295, gnl|echTel1|scaffold_270792 (4066-3928) | |
| 118-295, gnl|hg17|chr5 (39160573-39160710) | |
| 118-295, gnl|Hg17|chr5 (39160830-39160600) | |
| 118-295, gnl|loxAfr1|scaffold_13578 (44295-44433) | |
| 118-295, gnl|mm7|chr15 (6473203-6473065) | |
| 118-295, gnl|Mm7|chr15 (6472970-6473173) | |
| 118-295, gnl|monDom2|scaffold_20 (32488997-32488844) | |
| 118-295, gnl|oryCun1|scaffold_63946 (4107-3963) | |
| 118-295, gnl|panTro1|chr4 (77585876-77585739) | |
| 118-295, gnl|rheMac2|chr6 (38948420-38948557) | |
| 118-295, gnl|rn3|chr2 (55852074-55851936) | |
| 305-695, gnl|bosTau2|chr20 (21232805-21232414) | |
| 305-695, gnl|canFam2|chr4 (73054202-73053637) | |
| 305-695, gnl|echTel1|scaffold_303276 (7956-8513) | |
| 305-695, gnl|hg17|chr5 (39160024-39160572) | |
| 305-695, gnl|Hg17|chr5 (39160589-39160199) | |
| 305-695, gnl|loxAfr1|scaffold_13578 (43727-44294) | |
| 305-695, gnl|mm7|chr15 (6473748-6473204) | |
| 305-695, gnl|Mm7|chr15 (6473183-6473604) | |
| 305-695, gnl|monDom2|scaffold_20 (32489517-32488998) | |
| 305-695, gnl|oryCun1|scaffold_63946 (4629-4108) | |
| 305-695, gnl|panTro1|chr4 (77586425-77585877) | |
| 305-695, gnl|rheMac2|chr6 (38947869-38948419) | |
| 305-695, gnl|rn3|chr2 (55852610-55852075) | |
| 733-885, gnl|bosTau2|chr20 (21232413-21232258) | |
| 733-885, gnl|Hg17|chr5 (39160160-39160015) | |
| 733-885, gnl|Mm7|chr15 (6473605-6473755) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.114797) |