Ss1.1-Pig3-SRG8015H03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCCGGTCGGAATCCTCAGCCTGTGGCTACTGGACCCCCGGCCCCACCGGAGGGATGCG GAGTGGCGGCGGCGGCGTGGCGGAACTGTGGCTTTAAGAGCGCGCCCAGAGCCCGGGATC CGGCCGGGCGGTCCTTCGCTGCTGCGCACCCCCGCGGAGCCGAGCTCAGCGCTGGCCGGA CGGGGCTGCCTGCTGCCGGGCTGCTGAGAACCAGCCCTCGACCTCTGCTTGAGGGTCCTT CCTCTGAAGACATCACCAGCGTGTGGAGCCTGCCCCACACCCACCCCCTGCCAAACCACG GCCTTTACCTGTGTCTTCCGGTGTTTCCCGTGCGACCCATCCTGTGGGAGTGCCTCGTGG GCTGCCCCGGAGTTCACCCCACGCTCAGCAGCACCAATGGTGAAGATGACAAGATCCAAG ACTTTCCAGGCATATCTGCCCTCATGCCACCGGACCTACAGCTGCATTCACTGCAGAGCC CACTTGGCCAATCATGATGAACTTATTTCCAAGTCGTTCCAAGGAAGTCAAGGACGAGCA TACCTCTTTAACTCAGTAGTGAACGTGGGCTGCGGGCCTGCGGAGGAGCGCGTGTTGCTA ACAGGACTGCACGCCGTCGCCGACATTTACTGTGAAAACTGCAAAACCACTCTGGGCTGG AAATATGAACATGCCTTTGAAAGCAGCCAGAAATATAAAGAAGGCAAATACATCATTGAG CTAGCACACATGATCAAGGACAATGGCTGGGACTGACCGGAGAGCATCTGCCCAACCCCG TGTCCACGTGAACGCCATCCAACTGAACATTCTACCCAAGCGTGAGAGAGTGACTGAACA CTTGGTTCCATCCATTTAGGGGCCTTGCCATCGGGGGCATTCTCCCACCCTGACGCCATC TTGCTGGTGACCGGCCTATAAATCGCTGTCTCTCTGTCTCTTTGCTTTGTCTCTGTTTGT GAGTTGATCCTGGCTTCTCTCTCTGTTCTAGTGTTAGCGGAAAACAAAACAACGAAAGGA ACAGATGCCTGCCCGCACGGTGGCAGCCCCCTTGGATGAGGGCCCCAGGGCCTGGGAAGA GCCGCCTGGTGGCCTCTTGTCAGGAGAGCAGTGGCACAGCACGGGGGTGTGAGGAAGAGG GGGACCGCAAGGGGCCCAGGTGGGTAGGGGATGGGAGAGGGTCGCGCGAGGGACAAACGT GTGCTGCTCCTGGACACCTGGTAACTTAGGCTTGAAATGGTCGACTTGTCTAAAAGGACA ACGAGAAAAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCCGGTCGGAATCCTCAGCCTGTGGCTACTGGACCCCCGGCCCCACCGGAGGGATGCG GAGTGGCGGCGGCGGCGTGGCGGAACTGTGGCTTTAAGAGCGCGCCCAGAGCCCGGGATC CGGCCGGGCGGTCCTTCGCTGCTGCGCACCCCCGCGGAGCCGAGCTCAGCGCTGGCCGGA CGGGGCTGCCTGCTGCCGGGCTGCTGAGAACCAGCCCTCGACCTCTGCTTGAGGGTCCTT CCTCTGAAGACATCACCAGCGTGTGGAGCCTGCCCCACACCCACCCCCTGCCAAACCACG GCCTTTACCTGTGTCTTCCGGTGTTTCCCGTGCGACCCATCCTGTGGGAGTGCCTCGTGG GCTGCCCCGGAGTTCACCCCACGCTCAGCAGCACCAATGGTGAAGATGACAAGATCCAAG ACTTTCCAGGCATATCTGCCCTCATGCCACCGGACCTACAGCTGCATTCACTGCAGAGCC CACTTGGCCAATCATGATGAACTTATTTCCAAGTCGTTCCAAGGAAGTCAAGGACGAGCA TACCTCTTTAACTCAGTAGTGAACGTGGGCTGCGGGCCTGCGGAGGAGCGCGTGTTGCTA ACAGGACTGCACGCCGTCGCCGACATTTACTGTGAAAACTGCAAAACCACTCTGGGCTGG AAATATGAACATGCCTTTGAAAGCAGCCAGAAATATAAAGAAGGCAAATACATCATTGAG CTAGCACACATGATCAAGGACAATGGCTGGGACTGACCGGAGAGCATCTGCCCAACCCCG TGTCCACGTGAACGCCATCCAACTGAACATTCTACCCAAGCGTGAGAGAGTGACTGAACA CTTGGTTCCATCCATTTAGGGGCCTTGCCATCGGGGGCATTCTCCCACCCTGACGCCATC TTGCTGGTGACCGGCCTATAAATCGCTGTCTCTCTGTCTCTTTGCTTTGTCTCTGTTTGT GAGTTGATCCTGGCTTCTCTCTCTGTTCTAGTGTTAGCGGAAAACAAAACAACGAAAGGA ACAGATGCCTGCCCGCACGGTGGCAGCCCCCTTGGATGAGGGCCCCAGGGCCTGGGAAGA GCCGCCTGGTGGCCTCTTGTCAGGAGAGCAGTGGCACAGCACGGGGGTGTGAGGAAGAGG GGGACCGCAAGGGGCCCAGGTGGGTAGGGGATGGGAGAGGGTCGCGCGAGGGACAAACGT GTGCTGCTCCTGGACACCTGGTAACTTAGGCTTGAAATGGTCGACTTGTCTAAAAGGACA ACGAGAAAAAGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 397-513, gnl|bosTau2|chr17 (45463582-45463466) | |
| 397-513, gnl|canFam2|chr26 (34037584-34037891) | |
| 397-513, gnl|canFam2|chr6 (21113532-21113633) | |
| 397-513, gnl|danRer3|chr3 (18414693-18414794) | |
| 397-513, gnl|danRer3|chr5 (3595152-3594863) | |
| 397-513, gnl|dasNov1|scaffold_186362 (1958-2237) | |
| 397-513, gnl|dasNov1|scaffold_186362 (1958-2055) | |
| 397-513, gnl|echTel1|scaffold_279930 (49862-49540) | |
| 397-513, gnl|echTel1|scaffold_292965 (172564-172463) | |
| 397-513, gnl|fr1|chrUn (129138108-129138401) | |
| 397-513, gnl|fr1|chrUn (94557846-94557745) | |
| 397-513, gnl|galGal2|chr15 (537708-537410) | |
| 397-513, gnl|hg17|chr16 (30014071-30014172) | |
| 397-513, gnl|hg17|chr22 (20389451-20389756) | |
| 397-513, gnl|Hg17|chr22 (20389587-20389471) | |
| 397-513, gnl|loxAfr1|scaffold_1209 (83725-83662) | |
| 397-513, gnl|loxAfr1|scaffold_9112 (33137-33452) | |
| 397-513, gnl|mm7|chr16 (16627808-16627505) | |
| 397-513, gnl|Mm7|chr16 (16627671-16627787) | |
| 397-513, gnl|mm7|chr7 (122874516-122874415) | |
| 397-513, gnl|monDom2|scaffold_112 (3596321-3596620) | |
| 397-513, gnl|monDom2|scaffold_5 (119650323-119650222) | |
| 397-513, gnl|oryCun1|scaffold_215058 (16399-16712) | |
| 397-513, gnl|oryCun1|scaffold_215058 (16431-16517) | |
| 397-513, gnl|panTro1|chr18 (30776851-30776924) | |
| 397-513, gnl|panTro1|chr23 (20416913-20417218) | |
| 397-513, gnl|rheMac2|chr10 (65463189-65463494) | |
| 397-513, gnl|rheMac2|chr20 (28076414-28076515) | |
| 397-513, gnl|rn3|chr1 (186103653-186103552) | |
| 397-513, gnl|rn3|chr11 (85976825-85977129) | |
| 397-513, gnl|tetNig1|chr12 (3764562-3764853) | |
| 397-513, gnl|tetNig1|chrUn_random (39420291-39420392) | |
| 397-513, gnl|xenTro1|scaffold_118 (272187-271908) | |
| 559-667, gnl|bosTau2|chr15 (50494360-50494468) | |
| 559-667, gnl|Hg17|chr11 (57170453-57170345) | |
| 559-667, gnl|Mm7|chr2 (84581137-84581245) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 397-513, gnl|bosTau2|chr17 (45463582-45463466) | |
| 397-513, gnl|canFam2|chr26 (34037584-34037891) | |
| 397-513, gnl|canFam2|chr6 (21113532-21113633) | |
| 397-513, gnl|danRer3|chr3 (18414693-18414794) | |
| 397-513, gnl|danRer3|chr5 (3595152-3594863) | |
| 397-513, gnl|dasNov1|scaffold_186362 (1958-2237) | |
| 397-513, gnl|dasNov1|scaffold_186362 (1958-2055) | |
| 397-513, gnl|echTel1|scaffold_279930 (49862-49540) | |
| 397-513, gnl|echTel1|scaffold_292965 (172564-172463) | |
| 397-513, gnl|fr1|chrUn (129138108-129138401) | |
| 397-513, gnl|fr1|chrUn (94557846-94557745) | |
| 397-513, gnl|galGal2|chr15 (537708-537410) | |
| 397-513, gnl|hg17|chr16 (30014071-30014172) | |
| 397-513, gnl|hg17|chr22 (20389451-20389756) | |
| 397-513, gnl|Hg17|chr22 (20389587-20389471) | |
| 397-513, gnl|loxAfr1|scaffold_1209 (83725-83662) | |
| 397-513, gnl|loxAfr1|scaffold_9112 (33137-33452) | |
| 397-513, gnl|mm7|chr16 (16627808-16627505) | |
| 397-513, gnl|Mm7|chr16 (16627671-16627787) | |
| 397-513, gnl|mm7|chr7 (122874516-122874415) | |
| 397-513, gnl|monDom2|scaffold_112 (3596321-3596620) | |
| 397-513, gnl|monDom2|scaffold_5 (119650323-119650222) | |
| 397-513, gnl|oryCun1|scaffold_215058 (16399-16712) | |
| 397-513, gnl|oryCun1|scaffold_215058 (16431-16517) | |
| 397-513, gnl|panTro1|chr18 (30776851-30776924) | |
| 397-513, gnl|panTro1|chr23 (20416913-20417218) | |
| 397-513, gnl|rheMac2|chr10 (65463189-65463494) | |
| 397-513, gnl|rheMac2|chr20 (28076414-28076515) | |
| 397-513, gnl|rn3|chr1 (186103653-186103552) | |
| 397-513, gnl|rn3|chr11 (85976825-85977129) | |
| 397-513, gnl|tetNig1|chr12 (3764562-3764853) | |
| 397-513, gnl|tetNig1|chrUn_random (39420291-39420392) | |
| 397-513, gnl|xenTro1|scaffold_118 (272187-271908) | |
| 559-667, gnl|bosTau2|chr15 (50494360-50494468) | |
| 559-667, gnl|Hg17|chr11 (57170453-57170345) | |
| 559-667, gnl|Mm7|chr2 (84581137-84581245) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |