Non-Coding RNA Search

Ss1.1-Pig3-SRG8015I11.5

Sequence:


               
               CCGCCTTGAAGCTCTGTTTGTTTTGAAGATCTGTCATCCAGGCAGAATGGAGTGTTCCGC
TCGCACACTGAAGATGTCAGGCACACCCCCCTGACCTTTTTCCCAGCCCAGCAGCTCTGA
TGAGTGGGCAGCCCTTGAGCCTGGAGACCCACAGCCACACTTGGATGATTTTACAGGAAT
CAGTGAGAGGTCTGAGCAGCTCCGCAGGGGCCGCCTCCCAGCGCCGCAGACATGGCCAAC
AGGACCCGCGCCCCCACCCCGTACGACAGCTACGAGTACTACCTGGATTACGTGGACCTC
ATTCCCGTGGACGAGAAGAAGCTGAAAGCCAACAAACATTTGATTGTCATCGCCTTCTGG
GTGAGCCTGGTGGCTTTTGTGGTGTTTCTCTTCCTCATCCTGCTCTACATGTCCTGGTCA
GGCTCCCCGCAGACCAGGAACAACACCCAGCACCACCCAACATGCCCCTGGAATCTCGGC
CTCAACCTCTCCCTCTGCTTCTGGAGGCAACCCGCACGCCACAGGGCTCCTGACGGACGC
TGCAGCCTCCACCGAGCTTGGTTGAGGGACCAGGCAGCAGCAGAGCATCTGGCCCCCTCC
AGCGGCTGCAGTGGGAGAGCCCCTCCATCTTGCTGCCCACCGCCCCCCAGGCCCACCCTG
CTCTCCTCTGGGACCTGGCCCTCGATGGGGACCCGCAGGGCATCCGCTGACATCAGGAAC
AAGCCCAGCGAGCGCCCGCTGCAAACAGAACCTCTCGATGTAGAACCAACACCGGCAAAT
GGGGGTCATTGCTGAAGGAACCGGGGAATTCAAAACACTTTGTGAGCAGTCTTCTCTGAT
TCTCCAGCAAGTCAGTCAAGATAAGAAGTTAGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCTTGAAGCTCTGTTTGTTTTGAAGATCTGTCATCCAGGCAGAATGGAGTGTTCCGC
TCGCACACTGAAGATGTCAGGCACACCCCCCTGACCTTTTTCCCAGCCCAGCAGCTCTGA
TGAGTGGGCAGCCCTTGAGCCTGGAGACCCACAGCCACACTTGGATGATTTTACAGGAAT
CAGTGAGAGGTCTGAGCAGCTCCGCAGGGGCCGCCTCCCAGCGCCGCAGACATGGCCAAC
AGGACCCGCGCCCCCACCCCGTACGACAGCTACGAGTACTACCTGGATTACGTGGACCTC
ATTCCCGTGGACGAGAAGAAGCTGAAAGCCAACAAACATTTGATTGTCATCGCCTTCTGG
GTGAGCCTGGTGGCTTTTGTGGTGTTTCTCTTCCTCATCCTGCTCTACATGTCCTGGTCA
GGCTCCCCGCAGACCAGGAACAACACCCAGCACCACCCAACATGCCCCTGGAATCTCGGC
CTCAACCTCTCCCTCTGCTTCTGGAGGCAACCCGCACGCCACAGGGCTCCTGACGGACGC
TGCAGCCTCCACCGAGCTTGGTTGAGGGACCAGGCAGCAGCAGAGCATCTGGCCCCCTCC
AGCGGCTGCAGTGGGAGAGCCCCTCCATCTTGCTGCCCACCGCCCCCCAGGCCCACCCTG
CTCTCCTCTGGGACCTGGCCCTCGATGGGGACCCGCAGGGCATCCGCTGACATCAGGAAC
AAGCCCAGCGAGCGCCCGCTGCAAACAGAACCTCTCGATGTAGAACCAACACCGGCAAAT
GGGGGTCATTGCTGAAGGAACCGGGGAATTCAAAACACTTTGTGAGCAGTCTTCTCTGAT
TCTCCAGCAAGTCAGTCAAGATAAGAAGTTAGCTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61844677|ref|XP_582078.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61844677|ref|XP_582078.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-337, gnl|bosTau2|chr1 (52658-53007)
               

               
               1-337, gnl|Hg17|chr21 (32592887-32593259)
               

               
               1-337, gnl|Mm7|chr16 (90788222-90788570)
               


               
               435-773, gnl|bosTau2|chr1 (66565-66871)
               

               
               435-773, gnl|Hg17|chr21 (32605863-32606182)
               

               
               435-773, gnl|Mm7|chr16 (90799129-90799444)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-337, gnl|bosTau2|chr1 (52658-53007)
               

               
               1-337, gnl|Hg17|chr21 (32592887-32593259)
               

               
               1-337, gnl|Mm7|chr16 (90788222-90788570)
               


               
               435-773, gnl|bosTau2|chr1 (66565-66871)
               

               
               435-773, gnl|Hg17|chr21 (32605863-32606182)
               

               
               435-773, gnl|Mm7|chr16 (90799129-90799444)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cov (0.528611)
               

               
               cag (0.302389)
               

               
               lnt (0.142308)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.528611)
               

               
               cag (0.302389)
               

               
               lnt (0.142308)

	1-337, gnl\|bosTau2\|chr1 (52658-53007)
	1-337, gnl\|Hg17\|chr21 (32592887-32593259)
	1-337, gnl\|Mm7\|chr16 (90788222-90788570)

	435-773, gnl\|bosTau2\|chr1 (66565-66871)
	435-773, gnl\|Hg17\|chr21 (32605863-32606182)
	435-773, gnl\|Mm7\|chr16 (90799129-90799444)