Non-Coding RNA Search

Ss1.1-Pig3-SRG8015J04.3

Sequence:


               
               TCCAGCTGGCTCCTGTTGGCCACATTCCTGCTGCTGTCCATCTTCTCCATGGTGGCCGGC
CTGATCTTGGCATCACACCTTTACATGGTGGCCAGTAACACCACCACCTGGGAGTTCATA
TATTCCCACCGCATCGCATACCTCCGCCAGCGCCCCGGCAACCCCTTCGACCGCGGCTTG
ACCCGCAACCTGGCCCACTTCTTCTGTGGATGGCCCTCGGGGTCCTGGGAGACCCTGTGG
GCCGAGGAGGAGGAGGAAGAGCGGGATGGCAGCAGCCAGGCTGTTTAGGGTCGCTGGAGG
CCAGGCCACCATCTCGTGCCTGAAGACCAGAGGGGCTGCACCAGGTGGGGTCGGCCCCCT
ACTCCTGCCCACTCCTCCCGGGCCTCGGGGCGGAGCTGAAGGACAGAACCCTGCCTGGGT
GGGCGGCCCTGCCCTCTCGAGGCAGGAGGGGAGGAAGAGGACCTGTCGGGGGTCGGGGGC
TCAGGCACAAAAGGACCCGGGCTTCGGAGAGGCCCACCCCCCCCACTCCAAGCCAGGCTG
CCTCCAGTGCACAGTTTTATATATTTAATAATCCATAAAGTAAGTCAAGTATTAAAAAAA
AAAAAGCCTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGCTGGCTCCTGTTGGCCACATTCCTGCTGCTGTCCATCTTCTCCATGGTGGCCGGC
CTGATCTTGGCATCACACCTTTACATGGTGGCCAGTAACACCACCACCTGGGAGTTCATA
TATTCCCACCGCATCGCATACCTCCGCCAGCGCCCCGGCAACCCCTTCGACCGCGGCTTG
ACCCGCAACCTGGCCCACTTCTTCTGTGGATGGCCCTCGGGGTCCTGGGAGACCCTGTGG
GCCGAGGAGGAGGAGGAAGAGCGGGATGGCAGCAGCCAGGCTGTTTAGGGTCGCTGGAGG
CCAGGCCACCATCTCGTGCCTGAAGACCAGAGGGGCTGCACCAGGTGGGGTCGGCCCCCT
ACTCCTGCCCACTCCTCCCGGGCCTCGGGGCGGAGCTGAAGGACAGAACCCTGCCTGGGT
GGGCGGCCCTGCCCTCTCGAGGCAGGAGGGGAGGAAGAGGACCTGTCGGGGGTCGGGGGC
TCAGGCACAAAAGGACCCGGGCTTCGGAGAGGCCCACCCCCCCCACTCCAAGCCAGGCTG
CCTCCAGTGCACAGTTTTATATATTTAATAATCCATAAAGTAAGTCAAGTATTAAAAAAA
AAAAAGCCTGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               360-457, - strand, RNAz p=0.999424

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-457, - strand, RNAz p=0.999424

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               387-513, - strand, RNAmicro p=0.95849

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               387-513, - strand, RNAmicro p=0.95849

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-608, gnl|bosTau2|chr11 (78516218-78515603)
               

               
               1-608, gnl|Hg17|chr9 (128563292-128562695)
               

               
               1-608, gnl|Mm7|chr2 (30098834-30098256)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-608, gnl|bosTau2|chr11 (78516218-78515603)
               

               
               1-608, gnl|Hg17|chr9 (128563292-128562695)
               

               
               1-608, gnl|Mm7|chr2 (30098834-30098256)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-608, gnl\|bosTau2\|chr11 (78516218-78515603)
	1-608, gnl\|Hg17\|chr9 (128563292-128562695)
	1-608, gnl\|Mm7\|chr2 (30098834-30098256)