Non-Coding RNA Search

Ss1.1-Pig3-SRG8015L04.3

Sequence:


               
               CATCGCTCGCATTTTTTTGTCGCTATACAAAAGGAGTGAAGAGCCAAGAGGACGAAGTCT
TTTTTTTTTTCCTGTGGGAGAACTTAATGCTGCGTTTATCATTAACCTAACACCCCAACA
TAAAACAAAAGGAAGAAGAGGAGGAAGGAAGGAAAAGAAGGTGATTCGGGAAGACAGTGA
TCATGTCAGGGCGGCCCATAACCACCTCCTTTGCGGAGAGCTGCAAGCCAGTGCAGCAGC
CTTCATCTTTTGGCAGCATGAAAGTTAGCAGAGACAAGGATGGCAGCAAGGTGACCACAG
TGGTGGCAACTCCTGGGCAGGGTCCAGACAGGCCACAAGAAGTCAGCTATACAGACACTA
AAGTGATTGGAAATGGGTCATTTGGTGTGGTGTATCAAGCCAAGCTTTGTGATTCAGGAG
AACTGGTTGCCATCAAGAAAGTATTGCAGGACAAGAGATTTAAGAACCGAGAGCTCCAAA
TCATGAGAAAGATAGATCACTGTAACATAGTCCGATTGCGTTATTTCTTCTACTCAAGAA
TTGTCAAGTAATCCACCTCTAGCTACCATCCTTATTCCTCCTCATGCTCGGATTCAAGCA
GCTGCTTCAACCCCTTCAAATGCCACAGCAGCCTCAGATACTAATGCCGGAGATCGTGGG
CAGACCAATAACACCGCTTCTGCGTCAGCTTCCAATTCCACCTGAACAGTCCCGAGCAGC
CAGCTGCACAGGAAGAACCACCAGTTACTTGAGTGTCACTCAGCAACACTGGTCACGTTT
GGAAAGAAAATTAAAAAGAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCGCTCGCATTTTTTTGTCGCTATACAAAAGGAGTGAAGAGCCAAGAGGACGAAGTCT
TTTTTTTTTTCCTGTGGGAGAACTTAATGCTGCGTTTATCATTAACCTAACACCCCAACA
TAAAACAAAAGGAAGAAGAGGAGGAAGGAAGGAAAAGAAGGTGATTCGGGAAGACAGTGA
TCATGTCAGGGCGGCCCATAACCACCTCCTTTGCGGAGAGCTGCAAGCCAGTGCAGCAGC
CTTCATCTTTTGGCAGCATGAAAGTTAGCAGAGACAAGGATGGCAGCAAGGTGACCACAG
TGGTGGCAACTCCTGGGCAGGGTCCAGACAGGCCACAAGAAGTCAGCTATACAGACACTA
AAGTGATTGGAAATGGGTCATTTGGTGTGGTGTATCAAGCCAAGCTTTGTGATTCAGGAG
AACTGGTTGCCATCAAGAAAGTATTGCAGGACAAGAGATTTAAGAACCGAGAGCTCCAAA
TCATGAGAAAGATAGATCACTGTAACATAGTCCGATTGCGTTATTTCTTCTACTCAAGAA
TTGTCAAGTAATCCACCTCTAGCTACCATCCTTATTCCTCCTCATGCTCGGATTCAAGCA
GCTGCTTCAACCCCTTCAAATGCCACAGCAGCCTCAGATACTAATGCCGGAGATCGTGGG
CAGACCAATAACACCGCTTCTGCGTCAGCTTCCAATTCCACCTGAACAGTCCCGAGCAGC
CAGCTGCACAGGAAGAACCACCAGTTACTTGAGTGTCACTCAGCAACACTGGTCACGTTT
GGAAAGAAAATTAAAAAGAGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               144-263, + strand, RNAz p=0.724695

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-263, + strand, RNAz p=0.724695

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002093, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002093, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-274, gnl|bosTau2|chr1 (30386652-30386380)
               

               
               1-274, gnl|Hg17|chr3 (121295154-121294880)
               

               
               1-274, gnl|Mm7|chr16 (37797135-37797418)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-274, gnl|bosTau2|chr1 (30386652-30386380)
               

               
               1-274, gnl|Hg17|chr3 (121295154-121294880)
               

               
               1-274, gnl|Mm7|chr16 (37797135-37797418)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	1-274, gnl\|bosTau2\|chr1 (30386652-30386380)
	1-274, gnl\|Hg17\|chr3 (121295154-121294880)
	1-274, gnl\|Mm7\|chr16 (37797135-37797418)