Non-Coding RNA Search

Ss1.1-Pig3-SRG8015M04.5

Sequence:


               
               CAGGAATCAAACCTGCACCTGTACCCATAGCCACAGCAATGACAACGGCAGATCCTTAAA
CCACTAAGCCACTAGGGAACTCCTCCAGAACCTGACTTAAAAAAGCAACACTAAGATCCA
GGTAACATACAGGCTCCGTGACAGCAGGTGCTCCTCCTCCCATGACACCCCATACACCTG
GGCAGATTTTCCTCTCCCCGCACAAGACACGGCGCCAAGATGGACAGAGGCAGGGAGGGG
GCTTAAAAATCTGCCCACACCGAGCCTTGTTGCCAGGGGATGTGCATATCTGCTGGCCTG
GCGCTGTGGCCTGGTGGGTCTATGCAACTGTCACAACGTGAGTGTGTGTGATGACTTCTC
CTCTGACACTCCTCACAACTTCTGAGTGTTCTGTGCATTTTAAAATGATTCTTACCATGT
AAATATTATATTACACTTTAATAAAAAGGTTTTTTTGCATTTTACTTTTGTAATATTTGA
GGGTTTATAGATTTTTATTTTATGGCTAAGTATACTTTTGTAAGGAAATATCGAAGTCTT
GAGTATTTTTATTCTTTTAAAACTCTAGCTAGTGTCCACTGTAAGCACGGATAAATATTA
TTGTATACAGTTTTCCTTCCCTTCCATCGCGTCTTTTTAAGGAACTGTGTTTTGGCGTAG
CGTTTTATTTAAAACTCTCTGCTTCATGTTACACACTGTGAATACTGAAGATTCTGAAAA
ATAAAGATGCATTTAAAATCTCTGTGCTGTGATGTTGTAGAAAATGGTAATGTGCATTGC
TTTGCCAAAGTGGTAGTTAAATGTTTAATGGTTTAGAACGCCTCGTGGAGAACGCGGATG
GGGTGGCTTCTGGTTGTTACTCACAGCGCGGGGCCTCAGCGGCAGCCCGCACATCTTTGG
AGAGCGACACATGAATGGTGAGCGCCTGCTCCGTTAGGAAGTATGGTTATGTTGACATTA
TACGTACTGTGTTGTGGTTTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAATCAAACCTGCACCTGTACCCATAGCCACAGCAATGACAACGGCAGATCCTTAAA
CCACTAAGCCACTAGGGAACTCCTCCAGAACCTGACTTAAAAAAGCAACACTAAGATCCA
GGTAACATACAGGCTCCGTGACAGCAGGTGCTCCTCCTCCCATGACACCCCATACACCTG
GGCAGATTTTCCTCTCCCCGCACAAGACACGGCGCCAAGATGGACAGAGGCAGGGAGGGG
GCTTAAAAATCTGCCCACACCGAGCCTTGTTGCCAGGGGATGTGCATATCTGCTGGCCTG
GCGCTGTGGCCTGGTGGGTCTATGCAACTGTCACAACGTGAGTGTGTGTGATGACTTCTC
CTCTGACACTCCTCACAACTTCTGAGTGTTCTGTGCATTTTAAAATGATTCTTACCATGT
AAATATTATATTACACTTTAATAAAAAGGTTTTTTTGCATTTTACTTTTGTAATATTTGA
GGGTTTATAGATTTTTATTTTATGGCTAAGTATACTTTTGTAAGGAAATATCGAAGTCTT
GAGTATTTTTATTCTTTTAAAACTCTAGCTAGTGTCCACTGTAAGCACGGATAAATATTA
TTGTATACAGTTTTCCTTCCCTTCCATCGCGTCTTTTTAAGGAACTGTGTTTTGGCGTAG
CGTTTTATTTAAAACTCTCTGCTTCATGTTACACACTGTGAATACTGAAGATTCTGAAAA
ATAAAGATGCATTTAAAATCTCTGTGCTGTGATGTTGTAGAAAATGGTAATGTGCATTGC
TTTGCCAAAGTGGTAGTTAAATGTTTAATGGTTTAGAACGCCTCGTGGAGAACGCGGATG
GGGTGGCTTCTGGTTGTTACTCACAGCGCGGGGCCTCAGCGGCAGCCCGCACATCTTTGG
AGAGCGACACATGAATGGTGAGCGCCTGCTCCGTTAGGAAGTATGGTTATGTTGACATTA
TACGTACTGTGTTGTGGTTTTGCA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               81-215, gnl|bosTau2|chr1 (39072754-39072621)
               

               
               81-215, gnl|Hg17|chr3 (124093047-124093184)
               


               
               230-982, gnl|bosTau2|chr1 (39072363-39071624)
               

               
               230-982, gnl|Hg17|chr3 (124093199-124093931)
               

               
               230-982, gnl|Mm7|chr16 (35360146-35359416)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-215, gnl|bosTau2|chr1 (39072754-39072621)
               

               
               81-215, gnl|Hg17|chr3 (124093047-124093184)
               


               
               230-982, gnl|bosTau2|chr1 (39072363-39071624)
               

               
               230-982, gnl|Hg17|chr3 (124093199-124093931)
               

               
               230-982, gnl|Mm7|chr16 (35360146-35359416)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               sto (0.359648)
               

               
               sin (0.174948)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               sin (0.174948)
               

               
               eje (0.0988338)

	81-215, gnl\|bosTau2\|chr1 (39072754-39072621)
	81-215, gnl\|Hg17\|chr3 (124093047-124093184)

	230-982, gnl\|bosTau2\|chr1 (39072363-39071624)
	230-982, gnl\|Hg17\|chr3 (124093199-124093931)
	230-982, gnl\|Mm7\|chr16 (35360146-35359416)