Ss1.1-Pig3-SRG8015M07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGGAGAACATTTACTGGCTGACGAACCAAGGCAACTACAAACTGCTGGTGACCATGGA GGACTGGTCTGGCCGCAAGGTCTTTGCCGAATATGCCAGCTTCCGCCTGGAGCCTGAGAG CGAGTATTATAAACTTCGGCTGGGGCGCTACCATGGCAACGCTGGTGACTCCTTCACCTG GCACAATGGCAAGCAATTCACCACCCTGGACAGAGACCATGATGTCTACACAGGAAACTG TGCCCACTACCAGAAGGGCGGCTGGTGGTATAACGCCTGTGCCCACTCCAACCTCAACGG GGTCTGGTACCGCGGGGGTCACTACCGGAGCCGCTACCAGGATGGAGTGTACTGGGCTGA GTTCCGAGGAGGCTCCTACTCGCTCAAGAAAGTGGTGATGATGATACGGCCCAACCCCAA CACCTTCCACTAGGCCGGCTCCCCTCCTGACCTCTCGTGGCCATCAGAAGCCTGCCGGCC GGCCTGCTGACCCCAGCGCGGAGAGCACCTCGAGGCCAGGAGGACCGGACGCTGGACTGT TCTCCCAAGTCACTGCAGCAGATAATGGAACTGAATCGATTCGGTATTCTCGGTCCCTGC TACTTTTCTCCACGTCAGACAGCCCCTCACGTTTCCAGACAGGACAGGATGGCAGACAAG TCTTTCCTTAAATAAATTAAGTCCTTACAATAAAAACACAACTGCAAAATACCTTCATAA TAGACACGGTGTGTGGGCCAACCTCGTGCACTTGTGTGTCCTCCATATATGCATTTAGAT ATATACACGTGTCATATATCTAGATACATATACAGGTTTGCCTTACCTGCCTAAATACAC ATATATTCAACTCTCAGATGTTGAGGCTGTTAACAACAGCTCTGCTCTTAGGAGAAGGGC ATTTCATTCATGCTGTGTTCCTTGAGCCTAAGAACAGATCGTGGACTGTAGTAGCTCCAA TTCAAAGAGTAATCCTTGGCATCACAAGCCTGGATTCTTCCAGGAATGTCTAAGGGCTGT CCTCTCGCTTAGGGGTTCCCAACTTCCACTCTTAACATCTCCTTTTGGCATCTAATCCAA TTTCAAAATCCCCGTCCCTCTCCATTTCTACACCTTTCCTCGTTCTCAGGACTTTTCATC ACCCATCCATCCATCCATGCTTCCATCCATCCATCCATCCATCCATCCACCTGCCCGTTC ATTCAACGCCATTCGTGAAGTGCCTTCCGTGCCTCGGTCTTGGGCCACTCGTATTCTAGG CACCTCTTCTGCTCTCTCTCCGTCTTGCCTATGTACCCCTTACCTTTTCTGTCCCCCTGT GCTTCCTCTCCAGGCAAAATTCCTTAGCCTCTGAGTAGAAAATAGTCTGGACTCCATGTG GCCAGGAAAGGGAAACTCAGGCCCCAAAGCTATCGGTCCCACGGATAATGGTACCTGCAG TCTTGTTTCTTCTAGTCACACTTTAGCCTACCTGTCATTTTAACTTTCAGAGAAATGATA ACCTCCCTTGCCAGCAGATATTCAAGTGAAAAGAAGTCATCATCCAATTACTGGGGCCCC AAAAGGCTACCGACCAAAGGTCCTGGGCTCTCAGGCCGACTAGAGTCCACATCCCGTCTC CAAACTACACTTCCCCGGAGAACAGGTGCCAGGAAATGAGAAGCGGCCCCCTTGTCTGAG TTACTGAATAACCAGGGGCCACGGACCCCTTCGGTCCACAGCAGCACGGTGGCTTTCTGA ATCCTCTTGGCCACGAAGCGGCAGGCTCAGTGCTGCTGGAACTCTTGCCAAGCAGGGAGC GAGGGATGAATGAGAAGGTGAGACCCTCCCGGAGGGCGTGTGGGTCGGGGCGTGCGAGAT GTTGGAACGTTTGGTACTGTCCGCGTCTGGCTGTGTGCCTATTACCTCAGCAGTCTCACA AAGTGTACCATGTAGCACGTTTTGTGTACATAAAAGGGAGGGTTTGTTTGTTTGTTTGTT TTTTAATATATTCCCAGATTATCCTTGTAATGACACAAATCTGCAATAAAAGCCATCCGT GCTGTTTGGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGGAGAACATTTACTGGCTGACGAACCAAGGCAACTACAAACTGCTGGTGACCATGGA GGACTGGTCTGGCCGCAAGGTCTTTGCCGAATATGCCAGCTTCCGCCTGGAGCCTGAGAG CGAGTATTATAAACTTCGGCTGGGGCGCTACCATGGCAACGCTGGTGACTCCTTCACCTG GCACAATGGCAAGCAATTCACCACCCTGGACAGAGACCATGATGTCTACACAGGAAACTG TGCCCACTACCAGAAGGGCGGCTGGTGGTATAACGCCTGTGCCCACTCCAACCTCAACGG GGTCTGGTACCGCGGGGGTCACTACCGGAGCCGCTACCAGGATGGAGTGTACTGGGCTGA GTTCCGAGGAGGCTCCTACTCGCTCAAGAAAGTGGTGATGATGATACGGCCCAACCCCAA CACCTTCCACTAGGCCGGCTCCCCTCCTGACCTCTCGTGGCCATCAGAAGCCTGCCGGCC GGCCTGCTGACCCCAGCGCGGAGAGCACCTCGAGGCCAGGAGGACCGGACGCTGGACTGT TCTCCCAAGTCACTGCAGCAGATAATGGAACTGAATCGATTCGGTATTCTCGGTCCCTGC TACTTTTCTCCACGTCAGACAGCCCCTCACGTTTCCAGACAGGACAGGATGGCAGACAAG TCTTTCCTTAAATAAATTAAGTCCTTACAATAAAAACACAACTGCAAAATACCTTCATAA TAGACACGGTGTGTGGGCCAACCTCGTGCACTTGTGTGTCCTCCATATATGCATTTAGAT ATATACACGTGTCATATATCTAGATACATATACAGGTTTGCCTTACCTGCCTAAATACAC ATATATTCAACTCTCAGATGTTGAGGCTGTTAACAACAGCTCTGCTCTTAGGAGAAGGGC ATTTCATTCATGCTGTGTTCCTTGAGCCTAAGAACAGATCGTGGACTGTAGTAGCTCCAA TTCAAAGAGTAATCCTTGGCATCACAAGCCTGGATTCTTCCAGGAATGTCTAAGGGCTGT CCTCTCGCTTAGGGGTTCCCAACTTCCACTCTTAACATCTCCTTTTGGCATCTAATCCAA TTTCAAAATCCCCGTCCCTCTCCATTTCTACACCTTTCCTCGTTCTCAGGACTTTTCATC ACCCATCCATCCATCCATGCTTCCATCCATCCATCCATCCATCCATCCACCTGCCCGTTC ATTCAACGCCATTCGTGAAGTGCCTTCCGTGCCTCGGTCTTGGGCCACTCGTATTCTAGG CACCTCTTCTGCTCTCTCTCCGTCTTGCCTATGTACCCCTTACCTTTTCTGTCCCCCTGT GCTTCCTCTCCAGGCAAAATTCCTTAGCCTCTGAGTAGAAAATAGTCTGGACTCCATGTG GCCAGGAAAGGGAAACTCAGGCCCCAAAGCTATCGGTCCCACGGATAATGGTACCTGCAG TCTTGTTTCTTCTAGTCACACTTTAGCCTACCTGTCATTTTAACTTTCAGAGAAATGATA ACCTCCCTTGCCAGCAGATATTCAAGTGAAAAGAAGTCATCATCCAATTACTGGGGCCCC AAAAGGCTACCGACCAAAGGTCCTGGGCTCTCAGGCCGACTAGAGTCCACATCCCGTCTC CAAACTACACTTCCCCGGAGAACAGGTGCCAGGAAATGAGAAGCGGCCCCCTTGTCTGAG TTACTGAATAACCAGGGGCCACGGACCCCTTCGGTCCACAGCAGCACGGTGGCTTTCTGA ATCCTCTTGGCCACGAAGCGGCAGGCTCAGTGCTGCTGGAACTCTTGCCAAGCAGGGAGC GAGGGATGAATGAGAAGGTGAGACCCTCCCGGAGGGCGTGTGGGTCGGGGCGTGCGAGAT GTTGGAACGTTTGGTACTGTCCGCGTCTGGCTGTGTGCCTATTACCTCAGCAGTCTCACA AAGTGTACCATGTAGCACGTTTTGTGTACATAAAAGGGAGGGTTTGTTTGTTTGTTTGTT TTTTAATATATTCCCAGATTATCCTTGTAATGACACAAATCTGCAATAAAAGCCATCCGT GCTGTTTGGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 699-851, - strand, RNAz p=0.999869 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 699-851, - strand, RNAz p=0.999869 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 2-234, gnl|bosTau2|chr11 (74896231-74896463) | |
| 2-234, gnl|canFam2|chr9 (59560682-59560362) | |
| 2-234, gnl|danRer3|chrUn (130296019-130296311) | |
| 2-234, gnl|dasNov1|scaffold_183986 (837-1144) | |
| 2-234, gnl|echTel1|scaffold_313276 (144260-144581) | |
| 2-234, gnl|fr1|chrUn (47320217-47320508) | |
| 2-234, gnl|galGal2|chr17 (147656-147338) | |
| 2-234, gnl|hg17|chr9 (126933492-126933812) | |
| 2-234, gnl|Hg17|chr9 (126933734-126933502) | |
| 2-234, gnl|loxAfr1|scaffold_2349 (56696-56377) | |
| 2-234, gnl|mm7|chr2 (33251273-33250954) | |
| 2-234, gnl|Mm7|chr2 (33251029-33251261) | |
| 2-234, gnl|monDom2|scaffold_38 (22411870-22412184) | |
| 2-234, gnl|oryCun1|scaffold_210473 (40445-40765) | |
| 2-234, gnl|panTro1|chr11 (111745592-111745912) | |
| 2-234, gnl|rheMac2|chr15 (99495389-99495069) | |
| 2-234, gnl|rn3|chr3 (12150257-12149937) | |
| 2-234, gnl|tetNig1|chr1_random (2877400-2877103) | |
| 2-234, gnl|xenTro1|scaffold_1095 (123699-124005) | |
| 508-2052, gnl|bosTau2|chr11 (74899137-74900629) | |
| 508-2052, gnl|Hg17|chr9 (126930762-126929173) | |
| 508-2052, gnl|Mm7|chr2 (33253636-33255030) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-234, gnl|bosTau2|chr11 (74896231-74896463) | |
| 2-234, gnl|canFam2|chr9 (59560682-59560362) | |
| 2-234, gnl|danRer3|chrUn (130296019-130296311) | |
| 2-234, gnl|dasNov1|scaffold_183986 (837-1144) | |
| 2-234, gnl|echTel1|scaffold_313276 (144260-144581) | |
| 2-234, gnl|fr1|chrUn (47320217-47320508) | |
| 2-234, gnl|galGal2|chr17 (147656-147338) | |
| 2-234, gnl|hg17|chr9 (126933492-126933812) | |
| 2-234, gnl|Hg17|chr9 (126933734-126933502) | |
| 2-234, gnl|loxAfr1|scaffold_2349 (56696-56377) | |
| 2-234, gnl|mm7|chr2 (33251273-33250954) | |
| 2-234, gnl|Mm7|chr2 (33251029-33251261) | |
| 2-234, gnl|monDom2|scaffold_38 (22411870-22412184) | |
| 2-234, gnl|oryCun1|scaffold_210473 (40445-40765) | |
| 2-234, gnl|panTro1|chr11 (111745592-111745912) | |
| 2-234, gnl|rheMac2|chr15 (99495389-99495069) | |
| 2-234, gnl|rn3|chr3 (12150257-12149937) | |
| 2-234, gnl|tetNig1|chr1_random (2877400-2877103) | |
| 2-234, gnl|xenTro1|scaffold_1095 (123699-124005) | |
| 508-2052, gnl|bosTau2|chr11 (74899137-74900629) | |
| 508-2052, gnl|Hg17|chr9 (126930762-126929173) | |
| 508-2052, gnl|Mm7|chr2 (33253636-33255030) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| ton (0.351) | |
| cut (0.339847) | |
| cga (0.279096) | |
| cly (0.241284) | |
| eru (0.240096) | |
| jca (0.22792) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) | |
| cut (0.339847) | |
| cga (0.279096) | |
| cly (0.241284) | |
| eru (0.240096) | |
| jca (0.22792) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) |