Ss1.1-Pig3-SRG8015M12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACACTTTGGGCATCGAATATGGTGACAAGGAGAGAAAGGCTGATGCCAAGATGGTGTGT GACGTGGTGAGTCGGATGGAAGACACGGAGCCCTTCTCTGCAGAGCTGCTCTCCGCCATG ATGCGCCTCTGGGGCGACTCAGGGATCCAGGAGTGCTTCAACAGGTCCCGGGAGTACCAG CTCAATGACTCGGCCAAATACTACCTGGACAGCCTGGATCGGATCGGGGCCGCCGACTAC CAGCCCACCGAGCAGGACATCCTCCGAACCAGGGTCAAAACCACCGGCATCGTAGAAACC CACTTCACATTCAAGAACCTCCACTTCAGGCTGTTCGACGTCGGGGGTCAACGATCTGAA CGCAAGAAGTGGATCCACTGCTTCGAGGACGTCACGGCCATCATCTTCTGCGTCGCGCTC AGCGGCTATGACCAGGTGCTCCATGAAGACGAGACCACGAACCGCATGCACGAGTCTCTC ATGCTCTTCGACTCCATCTGTAACAACAAGTTCTTCATCGATACCTCCATCATTCTCTTC CTCAACAAGAAAGATCTCTTGGGTGAGAAGATCAAGAAGTCACCTCTGACCATCTGCTTT CCTGAGTACACAGGCCCCAACACCTATGAAGATGCCGCCGCCTACATCCAAACACAATTT GAAAGCAAAAACCGCTCGCCCAACAAAGAAATTTATTGTCACATGACTTGTGCCACAGAC ACGAATAACATCCAGGTGGTGTTCGACGCCGTCACCGACATCATCATTGCCAACAACCTC CGGGGCTGCGGCTTGTACTGACCTCTTGTCCTGTATAGCAACCTATTTGACTGCTTCACG GACTCTCTGCTGTTGACGTTGATCTCCTGGTAGCATGACCTTTTGGCCTTTGTAAGACAC ACAGCCTTTCTGTATCAAGCCCCTGTCTAACCTACGACCCAGAGTGACTGACGGCTGTGT ATTTCTGTAGAATGCTGTAGAATCCGGTTTTAGTTGAGTCTTTACATTTAGAATTTGAAA GGAAAAGAAGAACATTTCTCATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACACTTTGGGCATCGAATATGGTGACAAGGAGAGAAAGGCTGATGCCAAGATGGTGTGT GACGTGGTGAGTCGGATGGAAGACACGGAGCCCTTCTCTGCAGAGCTGCTCTCCGCCATG ATGCGCCTCTGGGGCGACTCAGGGATCCAGGAGTGCTTCAACAGGTCCCGGGAGTACCAG CTCAATGACTCGGCCAAATACTACCTGGACAGCCTGGATCGGATCGGGGCCGCCGACTAC CAGCCCACCGAGCAGGACATCCTCCGAACCAGGGTCAAAACCACCGGCATCGTAGAAACC CACTTCACATTCAAGAACCTCCACTTCAGGCTGTTCGACGTCGGGGGTCAACGATCTGAA CGCAAGAAGTGGATCCACTGCTTCGAGGACGTCACGGCCATCATCTTCTGCGTCGCGCTC AGCGGCTATGACCAGGTGCTCCATGAAGACGAGACCACGAACCGCATGCACGAGTCTCTC ATGCTCTTCGACTCCATCTGTAACAACAAGTTCTTCATCGATACCTCCATCATTCTCTTC CTCAACAAGAAAGATCTCTTGGGTGAGAAGATCAAGAAGTCACCTCTGACCATCTGCTTT CCTGAGTACACAGGCCCCAACACCTATGAAGATGCCGCCGCCTACATCCAAACACAATTT GAAAGCAAAAACCGCTCGCCCAACAAAGAAATTTATTGTCACATGACTTGTGCCACAGAC ACGAATAACATCCAGGTGGTGTTCGACGCCGTCACCGACATCATCATTGCCAACAACCTC CGGGGCTGCGGCTTGTACTGACCTCTTGTCCTGTATAGCAACCTATTTGACTGCTTCACG GACTCTCTGCTGTTGACGTTGATCTCCTGGTAGCATGACCTTTTGGCCTTTGTAAGACAC ACAGCCTTTCTGTATCAAGCCCCTGTCTAACCTACGACCCAGAGTGACTGACGGCTGTGT ATTTCTGTAGAATGCTGTAGAATCCGGTTTTAGTTGAGTCTTTACATTTAGAATTTGAAA GGAAAAGAAGAACATTTCTCATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 459-577, - strand, RNAz p=0.594855 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 459-577, - strand, RNAz p=0.594855 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 38-200, gnl|bosTau2|chr18 (25299985-25300147) | |
| 38-200, gnl|canFam2|chr2 (62711879-62711694) | |
| 38-200, gnl|danRer3|chr18 (29262111-29261934) | |
| 38-200, gnl|dasNov1|scaffold_96841 (2043-1854) | |
| 38-200, gnl|echTel1|scaffold_278763 (1730-1547) | |
| 38-200, gnl|fr1|chrUn (313774808-313774626) | |
| 38-200, gnl|galGal2|chr11 (2176325-2176513) | |
| 38-200, gnl|hg17|chr16 (54920028-54920216) | |
| 38-200, gnl|Hg17|chr16 (54920042-54920204) | |
| 38-200, gnl|loxAfr1|scaffold_126342 (1367-1552) | |
| 38-200, gnl|mm7|chr8 (92533226-92533414) | |
| 38-200, gnl|Mm7|chr8 (92533240-92533402) | |
| 38-200, gnl|monDom2|scaffold_35 (22939336-22939524) | |
| 38-200, gnl|oryCun1|scaffold_127137 (806-598) | |
| 38-200, gnl|panTro1|chr18 (49014537-49014725) | |
| 38-200, gnl|rheMac2|chr20 (54644684-54644872) | |
| 38-200, gnl|rn3|chr19 (11499825-11499635) | |
| 38-200, gnl|tetNig1|chr5 (5211710-5211508) | |
| 38-200, gnl|xenTro1|scaffold_180 (320622-320450) | |
| 201-330, gnl|bosTau2|chr18 (25307448-25307577) | |
| 201-330, gnl|canFam2|chr2 (62706767-62706593) | |
| 201-330, gnl|danRer3|chr18 (29243668-29243515) | |
| 201-330, gnl|dasNov1|scaffold_98027 (4183-4033) | |
| 201-330, gnl|echTel1|scaffold_188800 (1234-1080) | |
| 201-330, gnl|fr1|chrUn (313773828-313773677) | |
| 201-330, gnl|galGal2|chr11 (2198197-2198343) | |
| 201-330, gnl|hg17|chr16 (54926126-54926300) | |
| 201-330, gnl|Hg17|chr16 (54926142-54926271) | |
| 201-330, gnl|loxAfr1|scaffold_60423 (2083-2258) | |
| 201-330, gnl|mm7|chr8 (92538432-92538602) | |
| 201-330, gnl|Mm7|chr8 (92538448-92538577) | |
| 201-330, gnl|monDom2|scaffold_35 (22949508-22949675) | |
| 201-330, gnl|oryCun1|scaffold_174716 (41811-41951) | |
| 201-330, gnl|panTro1|chr18 (49020628-49020802) | |
| 201-330, gnl|rheMac2|chr20 (54651109-54651283) | |
| 201-330, gnl|rn3|chr19 (11494803-11494639) | |
| 201-330, gnl|tetNig1|chr5 (5211474-5211311) | |
| 201-330, gnl|xenTro1|scaffold_180 (309048-308904) | |
| 459-616, gnl|bosTau2|chr17 (45148228-45148071) | |
| 459-616, gnl|canFam2|chr26 (30874827-30875014) | |
| 459-616, gnl|danRer3|chr4 (28240925-28240751) | |
| 459-616, gnl|dasNov1|scaffold_35957 (9181-9363) | |
| 459-616, gnl|echTel1|scaffold_264021 (3085-2908) | |
| 459-616, gnl|fr1|chrUn (107511785-107511973) | |
| 459-616, gnl|galGal2|chr15 (8638216-8638030) | |
| 459-616, gnl|hg17|chr22 (21789800-21789987) | |
| 459-616, gnl|Hg17|chr22 (21789827-21789984) | |
| 459-616, gnl|loxAfr1|scaffold_49072 (9044-8882) | |
| 459-616, gnl|mm7|chr10 (74670485-74670678) | |
| 459-616, gnl|Mm7|chr10 (74670518-74670675) | |
| 459-616, gnl|monDom2|scaffold_141 (1501553-1501743) | |
| 459-616, gnl|oryCun1|scaffold_198154 (56824-56637) | |
| 459-616, gnl|panTro1|chr23 (21895965-21896152) | |
| 459-616, gnl|rheMac2|chr10 (67271418-67271605) | |
| 459-616, gnl|rn3|chr20 (14149057-14148864) | |
| 459-616, gnl|tetNig1|chr4 (1267037-1266864) | |
| 459-616, gnl|xenTro1|scaffold_169 (395812-395984) | |
| 829-1041, gnl|bosTau2|chr18 (25326778-25326990) | |
| 829-1041, gnl|canFam2|chr2 (62687007-62686597) | |
| 829-1041, gnl|dasNov1|scaffold_37366 (43333-42956) | |
| 829-1041, gnl|echTel1|scaffold_180933 (1200-837) | |
| 829-1041, gnl|hg17|chr16 (54947495-54947878) | |
| 829-1041, gnl|Hg17|chr16 (54947515-54947728) | |
| 829-1041, gnl|loxAfr1|scaffold_4408 (86988-86611) | |
| 829-1041, gnl|mm7|chr8 (92557057-92557459) | |
| 829-1041, gnl|Mm7|chr8 (92557075-92557300) | |
| 829-1041, gnl|monDom2|scaffold_35 (22990443-22990845) | |
| 829-1041, gnl|oryCun1|scaffold_145941 (7894-7523) | |
| 829-1041, gnl|panTro1|chr18 (49041997-49042380) | |
| 829-1041, gnl|rheMac2|chr20 (54672446-54672841) | |
| 829-1041, gnl|rn3|chr19 (11477198-11476808) | |
| 829-1041, gnl|xenTro1|scaffold_180 (288071-287704) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 38-200, gnl|bosTau2|chr18 (25299985-25300147) | |
| 38-200, gnl|canFam2|chr2 (62711879-62711694) | |
| 38-200, gnl|danRer3|chr18 (29262111-29261934) | |
| 38-200, gnl|dasNov1|scaffold_96841 (2043-1854) | |
| 38-200, gnl|echTel1|scaffold_278763 (1730-1547) | |
| 38-200, gnl|fr1|chrUn (313774808-313774626) | |
| 38-200, gnl|galGal2|chr11 (2176325-2176513) | |
| 38-200, gnl|hg17|chr16 (54920028-54920216) | |
| 38-200, gnl|Hg17|chr16 (54920042-54920204) | |
| 38-200, gnl|loxAfr1|scaffold_126342 (1367-1552) | |
| 38-200, gnl|mm7|chr8 (92533226-92533414) | |
| 38-200, gnl|Mm7|chr8 (92533240-92533402) | |
| 38-200, gnl|monDom2|scaffold_35 (22939336-22939524) | |
| 38-200, gnl|oryCun1|scaffold_127137 (806-598) | |
| 38-200, gnl|panTro1|chr18 (49014537-49014725) | |
| 38-200, gnl|rheMac2|chr20 (54644684-54644872) | |
| 38-200, gnl|rn3|chr19 (11499825-11499635) | |
| 38-200, gnl|tetNig1|chr5 (5211710-5211508) | |
| 38-200, gnl|xenTro1|scaffold_180 (320622-320450) | |
| 201-330, gnl|bosTau2|chr18 (25307448-25307577) | |
| 201-330, gnl|canFam2|chr2 (62706767-62706593) | |
| 201-330, gnl|danRer3|chr18 (29243668-29243515) | |
| 201-330, gnl|dasNov1|scaffold_98027 (4183-4033) | |
| 201-330, gnl|echTel1|scaffold_188800 (1234-1080) | |
| 201-330, gnl|fr1|chrUn (313773828-313773677) | |
| 201-330, gnl|galGal2|chr11 (2198197-2198343) | |
| 201-330, gnl|hg17|chr16 (54926126-54926300) | |
| 201-330, gnl|Hg17|chr16 (54926142-54926271) | |
| 201-330, gnl|loxAfr1|scaffold_60423 (2083-2258) | |
| 201-330, gnl|mm7|chr8 (92538432-92538602) | |
| 201-330, gnl|Mm7|chr8 (92538448-92538577) | |
| 201-330, gnl|monDom2|scaffold_35 (22949508-22949675) | |
| 201-330, gnl|oryCun1|scaffold_174716 (41811-41951) | |
| 201-330, gnl|panTro1|chr18 (49020628-49020802) | |
| 201-330, gnl|rheMac2|chr20 (54651109-54651283) | |
| 201-330, gnl|rn3|chr19 (11494803-11494639) | |
| 201-330, gnl|tetNig1|chr5 (5211474-5211311) | |
| 201-330, gnl|xenTro1|scaffold_180 (309048-308904) | |
| 459-616, gnl|bosTau2|chr17 (45148228-45148071) | |
| 459-616, gnl|canFam2|chr26 (30874827-30875014) | |
| 459-616, gnl|danRer3|chr4 (28240925-28240751) | |
| 459-616, gnl|dasNov1|scaffold_35957 (9181-9363) | |
| 459-616, gnl|echTel1|scaffold_264021 (3085-2908) | |
| 459-616, gnl|fr1|chrUn (107511785-107511973) | |
| 459-616, gnl|galGal2|chr15 (8638216-8638030) | |
| 459-616, gnl|hg17|chr22 (21789800-21789987) | |
| 459-616, gnl|Hg17|chr22 (21789827-21789984) | |
| 459-616, gnl|loxAfr1|scaffold_49072 (9044-8882) | |
| 459-616, gnl|mm7|chr10 (74670485-74670678) | |
| 459-616, gnl|Mm7|chr10 (74670518-74670675) | |
| 459-616, gnl|monDom2|scaffold_141 (1501553-1501743) | |
| 459-616, gnl|oryCun1|scaffold_198154 (56824-56637) | |
| 459-616, gnl|panTro1|chr23 (21895965-21896152) | |
| 459-616, gnl|rheMac2|chr10 (67271418-67271605) | |
| 459-616, gnl|rn3|chr20 (14149057-14148864) | |
| 459-616, gnl|tetNig1|chr4 (1267037-1266864) | |
| 459-616, gnl|xenTro1|scaffold_169 (395812-395984) | |
| 829-1041, gnl|bosTau2|chr18 (25326778-25326990) | |
| 829-1041, gnl|canFam2|chr2 (62687007-62686597) | |
| 829-1041, gnl|dasNov1|scaffold_37366 (43333-42956) | |
| 829-1041, gnl|echTel1|scaffold_180933 (1200-837) | |
| 829-1041, gnl|hg17|chr16 (54947495-54947878) | |
| 829-1041, gnl|Hg17|chr16 (54947515-54947728) | |
| 829-1041, gnl|loxAfr1|scaffold_4408 (86988-86611) | |
| 829-1041, gnl|mm7|chr8 (92557057-92557459) | |
| 829-1041, gnl|Mm7|chr8 (92557075-92557300) | |
| 829-1041, gnl|monDom2|scaffold_35 (22990443-22990845) | |
| 829-1041, gnl|oryCun1|scaffold_145941 (7894-7523) | |
| 829-1041, gnl|panTro1|chr18 (49041997-49042380) | |
| 829-1041, gnl|rheMac2|chr20 (54672446-54672841) | |
| 829-1041, gnl|rn3|chr19 (11477198-11476808) | |
| 829-1041, gnl|xenTro1|scaffold_180 (288071-287704) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ecc (0.345105) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| hyp (0.142837) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.345105) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| hyp (0.142837) |