Ss1.1-Pig3-SRG8015N04.3
|
TCTGTTGTATTAATGGGGGTAATAACTTTTTATTTGCCTATGATATACGTCGTTTCTAAT
AAAATGTCCTAGGCTCTAGTGAGAACTGTCGACTTTTAATTACCAATCATTCCCCTTTTC
TCATTTTCCTGACATGTTCTTGGCTAGCTTTTTATAGGTTGATGCTTTTTCCTGATAAAT
CTCACCATTTAAAGGTGTTCATTTGGGTGTGATCTTAAAAAGCCTGTATCAAGAGCACCT
CTCTGATATGCAACCTGCATCAGCTTCTACTTTGTCTGGATGTCTTGAACTGTTGGAAGA
TTTTGATGTCTTAAACCCTGGCTGTTGCTTTTAAAATAAGGTGTGAAATATTGTTCTTTG
CATTAAGATTTGTGGGTTTTTGTTTTTGTTTTTGTTTTTGCTTTGTAAGCCCAGCACCAG
GTTTTGGAAAAATGCCTGTACTGTGAAAGCAAATCCGAACTCTTGCTGAGCCTCTTTCAT
TGTCGGAAATAGAATTGCTTTCCATCAGCCTCCAAAAATTGTGTATCTGGAATCAAAGAA
ATTTAACAGCAAGAATCCAGATTTTTAAATGTGCTTGTTTTCTAAATGCTAAATGTTTGT
AAAGCACCTTCAGTTCTTTGGATGAAAGGTGCTATATTCTGTCAGTGTAAATTAATAAAA
AGATTATAGGAAGTTTGTCAAAAAATGTTATCTAATGAAGTCTGTAGTATGTCCCAATAA
GAGGTTAGCATTTTATATAACACAGTTTAAATTAAAAAAAAATATGCTATTCAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTGTTGTATTAATGGGGGTAATAACTTTTTATTTGCCTATGATATACGTCGTTTCTAAT
AAAATGTCCTAGGCTCTAGTGAGAACTGTCGACTTTTAATTACCAATCATTCCCCTTTTC
TCATTTTCCTGACATGTTCTTGGCTAGCTTTTTATAGGTTGATGCTTTTTCCTGATAAAT
CTCACCATTTAAAGGTGTTCATTTGGGTGTGATCTTAAAAAGCCTGTATCAAGAGCACCT
CTCTGATATGCAACCTGCATCAGCTTCTACTTTGTCTGGATGTCTTGAACTGTTGGAAGA
TTTTGATGTCTTAAACCCTGGCTGTTGCTTTTAAAATAAGGTGTGAAATATTGTTCTTTG
CATTAAGATTTGTGGGTTTTTGTTTTTGTTTTTGTTTTTGCTTTGTAAGCCCAGCACCAG
GTTTTGGAAAAATGCCTGTACTGTGAAAGCAAATCCGAACTCTTGCTGAGCCTCTTTCAT
TGTCGGAAATAGAATTGCTTTCCATCAGCCTCCAAAAATTGTGTATCTGGAATCAAAGAA
ATTTAACAGCAAGAATCCAGATTTTTAAATGTGCTTGTTTTCTAAATGCTAAATGTTTGT
AAAGCACCTTCAGTTCTTTGGATGAAAGGTGCTATATTCTGTCAGTGTAAATTAATAAAA
AGATTATAGGAAGTTTGTCAAAAAATGTTATCTAATGAAGTCTGTAGTATGTCCCAATAA
GAGGTTAGCATTTTATATAACACAGTTTAAATTAAAAAAAAATATGCTATTCAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-751, gnl|bosTau2|chr11 (77001415-77000684) |
|
3-751, gnl|canFam2|chr9 (61263385-61262486) |
|
3-751, gnl|dasNov1|scaffold_109995 (1692-809) |
|
3-751, gnl|echTel1|scaffold_303568 (3455-4297) |
|
3-751, gnl|hg17|chr9 (124988366-124989248) |
|
3-751, gnl|Hg17|chr9 (124989144-124988424) |
|
3-751, gnl|loxAfr1|scaffold_4494 (31385-30489) |
|
3-751, gnl|mm7|chr2 (39201542-39202402) |
|
3-751, gnl|Mm7|chr2 (39202308-39201596) |
|
3-751, gnl|monDom2|scaffold_38 (19328362-19329312) |
|
3-751, gnl|oryCun1|scaffold_130988 (907-1771) |
|
3-751, gnl|panTro1|chr11 (109782296-109783158) |
|
3-751, gnl|rheMac2|chr15 (101491675-101490799) |
|
3-751, gnl|rn3|chr3 (18860393-18861260) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-751, gnl|bosTau2|chr11 (77001415-77000684) |
|
3-751, gnl|canFam2|chr9 (61263385-61262486) |
|
3-751, gnl|dasNov1|scaffold_109995 (1692-809) |
|
3-751, gnl|echTel1|scaffold_303568 (3455-4297) |
|
3-751, gnl|hg17|chr9 (124988366-124989248) |
|
3-751, gnl|Hg17|chr9 (124989144-124988424) |
|
3-751, gnl|loxAfr1|scaffold_4494 (31385-30489) |
|
3-751, gnl|mm7|chr2 (39201542-39202402) |
|
3-751, gnl|Mm7|chr2 (39202308-39201596) |
|
3-751, gnl|monDom2|scaffold_38 (19328362-19329312) |
|
3-751, gnl|oryCun1|scaffold_130988 (907-1771) |
|
3-751, gnl|panTro1|chr11 (109782296-109783158) |
|
3-751, gnl|rheMac2|chr15 (101491675-101490799) |
|
3-751, gnl|rn3|chr3 (18860393-18861260) |
|
mcp (0.341297) |
|
fce (0.271592) |
|
thg (0.253582) |
|
spc (0.226732) |
|
gul (0.177588) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
fco (0.157208) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
sug (0.127291) |
|
bla (0.124347) |
|
tra (0.123092) |
|
mcp (0.341297) |
|
fce (0.271592) |
|
thg (0.253582) |
|
spc (0.226732) |
|
gul (0.177588) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
fco (0.157208) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
sug (0.127291) |
|
bla (0.124347) |
|
tra (0.123092) |
