Ss1.1-Pig3-SRG8016A03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGTCATCTAAGAGAAGGCGGAATGTTCCCGTCGCTCCCGAGCGCCCTGAGGAGAAGCTG GAAAATGGTCGCCTCTCGCCGGACGCCTTCTTGTCCAAACCTGCTGCGCCGGAGCTTTTG AATGTGGCCGGAGACGCCGTCCCGCCCGGCCAGTTCGAGTCTCTGGCTGATGGTTTCACG GACCTAAGGAAAGACCATCTAACTCACAAGGCCGCCTGCAATGCGCTCCTGGGAGGAGCC CCAAACTGCAGTGTCCCTGTAGACGATCAAAAAGCCCCGACGCCCTCTGCCTTGGAACCT GGGCCAAATACTTTGCAAATAACTCCTGCCATGGCCCAGGGAATCAATGCTGATATAAAA CACCAGTTAATGAAGGAAGTTCGAAAATTTGGACGACGGTATGAAAGAATTTTCGTTTTG CTTGAAGGAGTGCAAGGACCTCTTGCAGTCAAGAAACAATTTGTTGAATTTACCATCAAG GAAGCTGCAAGGTTCAAAAGACGAGTCTTAATTCAGTACCTTGAGAAGGTACTAGAAAAA ATAGAATCACATCACCTTCTCCTCAACGTCAATCACATCAACAGCAGATCATCATGTTAA TGCAAAGAGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGTCATCTAAGAGAAGGCGGAATGTTCCCGTCGCTCCCGAGCGCCCTGAGGAGAAGCTG GAAAATGGTCGCCTCTCGCCGGACGCCTTCTTGTCCAAACCTGCTGCGCCGGAGCTTTTG AATGTGGCCGGAGACGCCGTCCCGCCCGGCCAGTTCGAGTCTCTGGCTGATGGTTTCACG GACCTAAGGAAAGACCATCTAACTCACAAGGCCGCCTGCAATGCGCTCCTGGGAGGAGCC CCAAACTGCAGTGTCCCTGTAGACGATCAAAAAGCCCCGACGCCCTCTGCCTTGGAACCT GGGCCAAATACTTTGCAAATAACTCCTGCCATGGCCCAGGGAATCAATGCTGATATAAAA CACCAGTTAATGAAGGAAGTTCGAAAATTTGGACGACGGTATGAAAGAATTTTCGTTTTG CTTGAAGGAGTGCAAGGACCTCTTGCAGTCAAGAAACAATTTGTTGAATTTACCATCAAG GAAGCTGCAAGGTTCAAAAGACGAGTCTTAATTCAGTACCTTGAGAAGGTACTAGAAAAA ATAGAATCACATCACCTTCTCCTCAACGTCAATCACATCAACAGCAGATCATCATGTTAA TGCAAAGAGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 271-386, - strand, RNAz p=0.576858 | |
| 493-612, - strand, RNAz p=0.578221 | |
| 508-612, - strand, RNAz p=0.868157 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 271-386, - strand, RNAz p=0.576858 | |
| 493-612, - strand, RNAz p=0.578221 | |
| 508-612, - strand, RNAz p=0.868157 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 24-396, gnl|bosTau2|chr3 (40279620-40279992) | |
| 24-396, gnl|canFam2|chrX (109116148-109116499) | |
| 24-396, gnl|dasNov1|scaffold_15310 (41012-41354) | |
| 24-396, gnl|echTel1|scaffold_314287 (9009-9357) | |
| 24-396, gnl|galGal2|chr4 (3953442-3953786) | |
| 24-396, gnl|hg17|chrX (134439197-134439548) | |
| 24-396, gnl|Hg17|chrX (134439234-134439606) | |
| 24-396, gnl|loxAfr1|scaffold_44876 (5380-5031) | |
| 24-396, gnl|mm7|chrX (51985397-51985748) | |
| 24-396, gnl|Mm7|chrX (51985434-51985806) | |
| 24-396, gnl|monDom2|scaffold_98 (46274-45951) | |
| 24-396, gnl|oryCun1|scaffold_128953 (4296-3987) | |
| 24-396, gnl|panTro1|chrX (139077152-139077503) | |
| 24-396, gnl|rheMac2|chrX (133822386-133822738) | |
| 24-396, gnl|xenTro1|scaffold_212 (343087-342747) | |
| 490-612, gnl|bosTau2|chr3 (40281626-40281748) | |
| 490-612, gnl|canFam2|chrX (109117758-109117875) | |
| 490-612, gnl|danRer3|chr14 (52901034-52901150) | |
| 490-612, gnl|dasNov1|scaffold_15310 (42209-42324) | |
| 490-612, gnl|echTel1|scaffold_314287 (11056-11171) | |
| 490-612, gnl|galGal2|chr4 (3955669-3955784) | |
| 490-612, gnl|hg17|chrX (134440957-134441071) | |
| 490-612, gnl|Hg17|chrX (134440971-134441093) | |
| 490-612, gnl|loxAfr1|scaffold_44876 (3298-3184) | |
| 490-612, gnl|mm7|chrX (51987572-51987686) | |
| 490-612, gnl|Mm7|chrX (51987586-51987707) | |
| 490-612, gnl|monDom2|scaffold_98 (37915-37791) | |
| 490-612, gnl|panTro1|chrX (139078912-139079026) | |
| 490-612, gnl|rheMac2|chrX (133824149-133824263) | |
| 490-612, gnl|xenTro1|scaffold_212 (340908-340788) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-396, gnl|bosTau2|chr3 (40279620-40279992) | |
| 24-396, gnl|canFam2|chrX (109116148-109116499) | |
| 24-396, gnl|dasNov1|scaffold_15310 (41012-41354) | |
| 24-396, gnl|echTel1|scaffold_314287 (9009-9357) | |
| 24-396, gnl|galGal2|chr4 (3953442-3953786) | |
| 24-396, gnl|hg17|chrX (134439197-134439548) | |
| 24-396, gnl|Hg17|chrX (134439234-134439606) | |
| 24-396, gnl|loxAfr1|scaffold_44876 (5380-5031) | |
| 24-396, gnl|mm7|chrX (51985397-51985748) | |
| 24-396, gnl|Mm7|chrX (51985434-51985806) | |
| 24-396, gnl|monDom2|scaffold_98 (46274-45951) | |
| 24-396, gnl|oryCun1|scaffold_128953 (4296-3987) | |
| 24-396, gnl|panTro1|chrX (139077152-139077503) | |
| 24-396, gnl|rheMac2|chrX (133822386-133822738) | |
| 24-396, gnl|xenTro1|scaffold_212 (343087-342747) | |
| 490-612, gnl|bosTau2|chr3 (40281626-40281748) | |
| 490-612, gnl|canFam2|chrX (109117758-109117875) | |
| 490-612, gnl|danRer3|chr14 (52901034-52901150) | |
| 490-612, gnl|dasNov1|scaffold_15310 (42209-42324) | |
| 490-612, gnl|echTel1|scaffold_314287 (11056-11171) | |
| 490-612, gnl|galGal2|chr4 (3955669-3955784) | |
| 490-612, gnl|hg17|chrX (134440957-134441071) | |
| 490-612, gnl|Hg17|chrX (134440971-134441093) | |
| 490-612, gnl|loxAfr1|scaffold_44876 (3298-3184) | |
| 490-612, gnl|mm7|chrX (51987572-51987686) | |
| 490-612, gnl|Mm7|chrX (51987586-51987707) | |
| 490-612, gnl|monDom2|scaffold_98 (37915-37791) | |
| 490-612, gnl|panTro1|chrX (139078912-139079026) | |
| 490-612, gnl|rheMac2|chrX (133824149-133824263) | |
| 490-612, gnl|xenTro1|scaffold_212 (340908-340788) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cbl (0.344392) | |
| med (0.232504) | |
| duo (0.172801) | |
| lnt (0.142308) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.344392) | |
| med (0.232504) | |
| duo (0.172801) | |
| lnt (0.142308) |