Non-Coding RNA Search

Ss1.1-Pig3-SRG8016B07.5

Sequence:


               
               TCCGGACCGTGAGGAAGAAAGGCTGGGGGAGCGACGCCTGCGTCCTGCGCGTACCCCCTC
TCGGCGCGGCCGGCCCCCTCCTCCTCGGCGGCGCGGCCACCATCTTCCTCTCGCTGCCAG
TGGTAGCGCTCGTCGGCGGAGCTGGGCTGAAAGACACACAGAAGTCTTCATGGGGGGGGG
GGGATACATTTAATCATTTAATTCCTACTGAACACTTAGATGATGCCCTATTTCTAGGAT
CCAACCTGGAGAATGAAGTCTGTGAGGATTTTAGTACAAGTCAAAATGTCTTAGAGGACT
CGCTGAAGAACATGCTCAGCGATAAGGATCCTATGCTAGGATCTGCAAGTAACCAGTTCT
GTTTGCCTGTTTTGGATAGCAATGATCCCAATTTCCAGATGCCTTGTTCAACAGTTGTTG
GTCTTGACGATATTATGGATGAAGGAGTTGTTAAAGAAAGTGGCAATGATACCATTGATG
AAGAAGAACTGATTTTACCTAACAGGAATTTGAGGGACAAAGTAGAAGAAAATTCAGTGA
GATCACCAAGAAAATCACCTCGTTTAATGGCACAAGAACAAGTAAGAAGTTTGCGACAAA
GCACTATTGCCAAGCGTTCAAATGCAGCACCTTTAAATAGCACAAAAAAAGCATCTGGGA
AGACTGTGTCAGCCCCTAAAGCAGGGGTGAAACAACCAGAAAGGTGTCAGGTCAAAGAAG
AAGTTGGTGCATCCCCAAAACTTGAGCACCATAAAGAGAGCAGGAGGCGCAGCCGACATG
CTGGGCAGATGGAAGCAGCAGTGTCGTCTTGTCTTGAGATGCAGGATGAAGCTGGAATAG
ATTCTGAGCAGAAATGTAATAATCAAGGAGAAGCAAATATGCCTTCTCATGAGTTAAACT
GTCCACTCCTTTCAGAGACTTGTGTTAGCATTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGGACCGTGAGGAAGAAAGGCTGGGGGAGCGACGCCTGCGTCCTGCGCGTACCCCCTC
TCGGCGCGGCCGGCCCCCTCCTCCTCGGCGGCGCGGCCACCATCTTCCTCTCGCTGCCAG
TGGTAGCGCTCGTCGGCGGAGCTGGGCTGAAAGACACACAGAAGTCTTCATGGGGGGGGG
GGGATACATTTAATCATTTAATTCCTACTGAACACTTAGATGATGCCCTATTTCTAGGAT
CCAACCTGGAGAATGAAGTCTGTGAGGATTTTAGTACAAGTCAAAATGTCTTAGAGGACT
CGCTGAAGAACATGCTCAGCGATAAGGATCCTATGCTAGGATCTGCAAGTAACCAGTTCT
GTTTGCCTGTTTTGGATAGCAATGATCCCAATTTCCAGATGCCTTGTTCAACAGTTGTTG
GTCTTGACGATATTATGGATGAAGGAGTTGTTAAAGAAAGTGGCAATGATACCATTGATG
AAGAAGAACTGATTTTACCTAACAGGAATTTGAGGGACAAAGTAGAAGAAAATTCAGTGA
GATCACCAAGAAAATCACCTCGTTTAATGGCACAAGAACAAGTAAGAAGTTTGCGACAAA
GCACTATTGCCAAGCGTTCAAATGCAGCACCTTTAAATAGCACAAAAAAAGCATCTGGGA
AGACTGTGTCAGCCCCTAAAGCAGGGGTGAAACAACCAGAAAGGTGTCAGGTCAAAGAAG
AAGTTGGTGCATCCCCAAAACTTGAGCACCATAAAGAGAGCAGGAGGCGCAGCCGACATG
CTGGGCAGATGGAAGCAGCAGTGTCGTCTTGTCTTGAGATGCAGGATGAAGCTGGAATAG
ATTCTGAGCAGAAATGTAATAATCAAGGAGAAGCAAATATGCCTTCTCATGAGTTAAACT
GTCCACTCCTTTCAGAGACTTGTGTTAGCATTGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864133|ref|XP_617939.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864133|ref|XP_617939.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               223-342, + strand, RNAz p=0.923845

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-342, + strand, RNAz p=0.923845

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX648268, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX648268, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               144-414, gnl|bosTau2|chr9 (15186-15455)
               

               
               144-414, gnl|Hg17|chr6 (64414390-64414659)
               

               
               144-414, gnl|Mm7|chr1 (31086521-31086252)
               


               
               575-935, gnl|bosTau2|chr9 (63461-63821)
               

               
               575-935, gnl|canFam2|chr12 (30152365-30153163)
               

               
               575-935, gnl|dasNov1|scaffold_31490 (7862-7063)
               

               
               575-935, gnl|echTel1|scaffold_212625 (17416-18187)
               

               
               575-935, gnl|galGal2|chr3 (83921469-83920722)
               

               
               575-935, gnl|hg17|chr6 (64451943-64452746)
               

               
               575-935, gnl|Hg17|chr6 (64451987-64452380)
               

               
               575-935, gnl|mm7|chr1 (31054872-31054108)
               

               
               575-935, gnl|Mm7|chr1 (31054826-31054436)
               

               
               575-935, gnl|monDom2|scaffold_0 (173311243-173310450)
               

               
               575-935, gnl|oryCun1|scaffold_209714 (77102-76235)
               

               
               575-935, gnl|panTro1|chr5_random (40472474-40473278)
               

               
               575-935, gnl|rheMac2|chr4 (60110692-60111495)
               

               
               575-935, gnl|rn3|chr9 (29506446-29505684)
               

               
               575-935, gnl|xenTro1|scaffold_192 (485971-486628)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-414, gnl|bosTau2|chr9 (15186-15455)
               

               
               144-414, gnl|Hg17|chr6 (64414390-64414659)
               

               
               144-414, gnl|Mm7|chr1 (31086521-31086252)
               


               
               575-935, gnl|bosTau2|chr9 (63461-63821)
               

               
               575-935, gnl|canFam2|chr12 (30152365-30153163)
               

               
               575-935, gnl|dasNov1|scaffold_31490 (7862-7063)
               

               
               575-935, gnl|echTel1|scaffold_212625 (17416-18187)
               

               
               575-935, gnl|galGal2|chr3 (83921469-83920722)
               

               
               575-935, gnl|hg17|chr6 (64451943-64452746)
               

               
               575-935, gnl|Hg17|chr6 (64451987-64452380)
               

               
               575-935, gnl|mm7|chr1 (31054872-31054108)
               

               
               575-935, gnl|Mm7|chr1 (31054826-31054436)
               

               
               575-935, gnl|monDom2|scaffold_0 (173311243-173310450)
               

               
               575-935, gnl|oryCun1|scaffold_209714 (77102-76235)
               

               
               575-935, gnl|panTro1|chr5_random (40472474-40473278)
               

               
               575-935, gnl|rheMac2|chr4 (60110692-60111495)
               

               
               575-935, gnl|rn3|chr9 (29506446-29505684)
               

               
               575-935, gnl|xenTro1|scaffold_192 (485971-486628)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	144-414, gnl\|bosTau2\|chr9 (15186-15455)
	144-414, gnl\|Hg17\|chr6 (64414390-64414659)
	144-414, gnl\|Mm7\|chr1 (31086521-31086252)

	575-935, gnl\|bosTau2\|chr9 (63461-63821)
	575-935, gnl\|canFam2\|chr12 (30152365-30153163)
	575-935, gnl\|dasNov1\|scaffold_31490 (7862-7063)
	575-935, gnl\|echTel1\|scaffold_212625 (17416-18187)
	575-935, gnl\|galGal2\|chr3 (83921469-83920722)
	575-935, gnl\|hg17\|chr6 (64451943-64452746)
	575-935, gnl\|Hg17\|chr6 (64451987-64452380)
	575-935, gnl\|mm7\|chr1 (31054872-31054108)
	575-935, gnl\|Mm7\|chr1 (31054826-31054436)
	575-935, gnl\|monDom2\|scaffold_0 (173311243-173310450)
	575-935, gnl\|oryCun1\|scaffold_209714 (77102-76235)
	575-935, gnl\|panTro1\|chr5_random (40472474-40473278)
	575-935, gnl\|rheMac2\|chr4 (60110692-60111495)
	575-935, gnl\|rn3\|chr9 (29506446-29505684)
	575-935, gnl\|xenTro1\|scaffold_192 (485971-486628)