Non-Coding RNA Search

Ss1.1-Pig3-SRG8016C14.5

Sequence:


               
               CAGAGGTGGCGAAGACGAAGATGGCAGTGACGAAGAGGTGGTTCACAATGAAGACATCCA
CTTTGAACCAATAGTGTCATTACCAGAGGTAGAAGTAAAATCTGGAGAAGAAGATGAAGA
AGTTTTATTTAAAGAGCGAGCCAAACTTTACAGGTGGGATCGAGAGGTCAGTCAGTGGAA
GGAGCGTGGGGTCGGAGACATAAAGATCCTCTGGCACACGATGAAGAGTTACTATCGGAT
CCTCATGCGCAGGGACCAGGTCTTTAAAGTGTGTGCAAATCATGTCATCACCAAAACCAT
GGAATTGAAACCCTTGAATGTCTCCAACAATGCTTTAGTTTGGACTGCCTCAGACTATGC
TGATGGAGAAGCCAAAGTGGAACAGCTTGCAGTGAGATTTAAAACTAAAGAAATGGCTGA
TTGTTTTAAGAAAACCTTTGAAGAATGTCAACAGAATTTGTTGAAACATCAGAAAGGACA
AACATCACTAACAGCAGAGTTATCAAAGGAGACAAATCCTGTGGTGTTTTTTGATGTTTG
TGCAGATGATCAACCTCTAGGACGCATAACCATGGAATTATTTTCAAACGTTGTTCCTCA
GACCGCTGAGAACTTCAGAGCACTGTGCACTGGAGAGAAGGGCTTCGGTTACAAGCACTC
CATCTTCCACAGAGTGATCCCAGATTTTGTTTGCCAAGGGGGAGACATCACCAAACATGA
TGGATCGGGAGGACGGTCCATTTATGGAGATAAATTTGAAGATGAAAACTTTGATGTGAA
ACATACTGGTCCTGGCTTACTGTCAATGGCCAATCGAGGCCAGAATACCAACAATTCTCA
ATTTTTCATAACACTGAAAAAAGCAGAACATTTGGACTTTAAGCATGTAGTATTTGGCTT
TGTTAAGGATGGCATGGATACTGTGAAAAAGATTGAATCATTTGGTTCTCCTAAAGGGTC
AGTTAGTCGAAGAATTACTATCGTAGAATGTGGACAGATACAGTAAAATCATTGTTTCAG
TAAATTTTTCTTGTATAAACCGTTGAATTAAAGCCTAGCTGTTATGACAATATGGTAATT
ATGTTCAGCTTTTGAAAATGGACGTTTCCAATGTATAAATGTAAAATTGCAGCTTATAGC
TGTTGTCGCTTTTTAATGTGTTATAATTGACCTTGCATGGTGTGAAATAAACGTTTAAAC
ACTGGTGTATTTCAGGTGTACTTGTGTTTATGTACTCCTGACATCTGTATTAAAGTGGAA
TAATACTTATTTTGTTCAAAGCAATAGACCTTCTCAAACTATTGAAGGATATATATGCAA
TTTAATTTTAATTCCTTTTATGATATTGGACTTCCTGCATGAATATACTTACTGTTTGAA
TAAAGGGACCATGACTTGGATAATTTTTCCTTTAGATTTGGAATATATTTTGTAATTTTA
ACTATTGGTGTGCTCATTTATGAATAGAGATTCACTTGTGAATGGATGGAGCCACAGAGG
GTAGAAACTTAACCAAAGTGCTCTTCTATAAATTCTTGCACATCCTGTATAGTTAAATTA
ACTTTTAAGCAAAGTAACTTCTTTCCTTAAAAAAGATATGAAGCTTCCAAGGTATTAAAT
TAATTTTTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGTGGCGAAGACGAAGATGGCAGTGACGAAGAGGTGGTTCACAATGAAGACATCCA
CTTTGAACCAATAGTGTCATTACCAGAGGTAGAAGTAAAATCTGGAGAAGAAGATGAAGA
AGTTTTATTTAAAGAGCGAGCCAAACTTTACAGGTGGGATCGAGAGGTCAGTCAGTGGAA
GGAGCGTGGGGTCGGAGACATAAAGATCCTCTGGCACACGATGAAGAGTTACTATCGGAT
CCTCATGCGCAGGGACCAGGTCTTTAAAGTGTGTGCAAATCATGTCATCACCAAAACCAT
GGAATTGAAACCCTTGAATGTCTCCAACAATGCTTTAGTTTGGACTGCCTCAGACTATGC
TGATGGAGAAGCCAAAGTGGAACAGCTTGCAGTGAGATTTAAAACTAAAGAAATGGCTGA
TTGTTTTAAGAAAACCTTTGAAGAATGTCAACAGAATTTGTTGAAACATCAGAAAGGACA
AACATCACTAACAGCAGAGTTATCAAAGGAGACAAATCCTGTGGTGTTTTTTGATGTTTG
TGCAGATGATCAACCTCTAGGACGCATAACCATGGAATTATTTTCAAACGTTGTTCCTCA
GACCGCTGAGAACTTCAGAGCACTGTGCACTGGAGAGAAGGGCTTCGGTTACAAGCACTC
CATCTTCCACAGAGTGATCCCAGATTTTGTTTGCCAAGGGGGAGACATCACCAAACATGA
TGGATCGGGAGGACGGTCCATTTATGGAGATAAATTTGAAGATGAAAACTTTGATGTGAA
ACATACTGGTCCTGGCTTACTGTCAATGGCCAATCGAGGCCAGAATACCAACAATTCTCA
ATTTTTCATAACACTGAAAAAAGCAGAACATTTGGACTTTAAGCATGTAGTATTTGGCTT
TGTTAAGGATGGCATGGATACTGTGAAAAAGATTGAATCATTTGGTTCTCCTAAAGGGTC
AGTTAGTCGAAGAATTACTATCGTAGAATGTGGACAGATACAGTAAAATCATTGTTTCAG
TAAATTTTTCTTGTATAAACCGTTGAATTAAAGCCTAGCTGTTATGACAATATGGTAATT
ATGTTCAGCTTTTGAAAATGGACGTTTCCAATGTATAAATGTAAAATTGCAGCTTATAGC
TGTTGTCGCTTTTTAATGTGTTATAATTGACCTTGCATGGTGTGAAATAAACGTTTAAAC
ACTGGTGTATTTCAGGTGTACTTGTGTTTATGTACTCCTGACATCTGTATTAAAGTGGAA
TAATACTTATTTTGTTCAAAGCAATAGACCTTCTCAAACTATTGAAGGATATATATGCAA
TTTAATTTTAATTCCTTTTATGATATTGGACTTCCTGCATGAATATACTTACTGTTTGAA
TAAAGGGACCATGACTTGGATAATTTTTCCTTTAGATTTGGAATATATTTTGTAATTTTA
ACTATTGGTGTGCTCATTTATGAATAGAGATTCACTTGTGAATGGATGGAGCCACAGAGG
GTAGAAACTTAACCAAAGTGCTCTTCTATAAATTCTTGCACATCCTGTATAGTTAAATTA
ACTTTTAAGCAAAGTAACTTCTTTCCTTAAAAAAGATATGAAGCTTCCAAGGTATTAAAT
TAATTTTTACAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8K0N5_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8K0N5_MOUSE

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               524-1007, gnl|bosTau2|chr10 (14393054-14393537)
               

               
               524-1007, gnl|Hg17|chr21 (19151983-19152466)
               

               
               524-1007, gnl|Mm7|chr9 (96537316-96537800)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               524-1007, gnl|bosTau2|chr10 (14393054-14393537)
               

               
               524-1007, gnl|Hg17|chr21 (19151983-19152466)
               

               
               524-1007, gnl|Mm7|chr9 (96537316-96537800)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

Help | Less info


               
               tra (0.861645)
               

               
               kid (0.518941)
               

               
               tbr (0.462535)
               

               
               lun (0.451467)
               

               
               csk (0.422238)
               

               
               ret (0.3862)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.861645)
               

               
               kid (0.518941)
               

               
               tbr (0.462535)
               

               
               lun (0.451467)
               

               
               csk (0.422238)
               

               
               ret (0.3862)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

	524-1007, gnl\|bosTau2\|chr10 (14393054-14393537)
	524-1007, gnl\|Hg17\|chr21 (19151983-19152466)
	524-1007, gnl\|Mm7\|chr9 (96537316-96537800)

	tra (0.861645)
	kid (0.518941)
	tbr (0.462535)
	lun (0.451467)
	csk (0.422238)
	ret (0.3862)
	spc (0.340097)
	vin (0.332557)
	fco (0.314416)
	cte (0.29274)
	liv (0.292569)
	lyg (0.266205)
	fcc (0.197785)
	aor (0.195274)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	mga (0.160205)
	bfe (0.149858)
	fat (0.147427)
	lin (0.145603)
	lnt (0.142308)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	ldo (0.0970026)