Non-Coding RNA Search

Ss1.1-Pig3-SRG8016D06.5

Sequence:


               
               TGGACGTTTGCCCAGAGAGAGCTTCTGGAAAAACAAGGAATTGATATGAAACAGGAGATG
GAAAAAAGATTACAGGAAATGGAGATCCTATACAAAAAGGAGAAAGAGGAAGCAGATCTT
CTCCTGGAGCAACAGAGACTGGACGCGGATTCTGATAGCGGGGACGATTCTGACAAGAGG
TCCTGTGAAGAGAGCTGGAAACTGATTACTTCTCTGAGAGAAAAGCTACCTCCCAGCAAG
TTGCAAACCATTGTTAAAAAATGTGGCCTCCCTAGCAGTGGGAAGAAACGAGAACCAATT
AAAATGTATCAGATCCCCCAAAGAAGGCGCCTGAGTAAAGATTCCAAGTGGGTCACCATC
TCATATCTTAAGATTCAGGCCGTAAAAGAGATATGCTATGAGGTCGCTCTCAATGACTTC
AGGCACAGTCGGCAGGAGATTGAAGCCTTGGCCATTGTGAAGATGAAAGAGCTTTGTGCC
ATGTACGGGAAGAAAGATCCCAATGAGCGGGACTCCTGGAGGGCAGTGGCCATGGATGTC
TGGGACACTGTTGGTGTAGGGGATGAGAAGATTGAAGACATGATGGCCAGTAATAAAGGT
GGCACTGATGTAGATGACCTCAAGGTTCATATCGACAAGCTGGAGGATATTTTGCAAGAA
GTCAAAAAGCAAAATAACATGAAAGACGAGGAGATAAAAGTCTTAAGAAATAAAATGCTC
AAAATGGAGAAAGTCTTACCACTGATTGGGTCTCAGGAACAGAAGGCCCAGGGAAACCAC
AAAGCAAAGGAACCTGTTGGTGCTGGTGCCAGTAGCAAGTCTGAGAATGATGCAAGTAAA
AGAGACAGTGGAGAACTTGGCAAAGAAGAGCGTGTTTCCCAGCTGATGAATGGGGATCCA
GCGTTTCGACGTGGACGTCTGCGTTGGATGAGACAGGAACAAATTCGGTTCAAGAACCTG
CAGCAGCAGGAGATAACAAAGCAGCTTCGTCGGCAGAACGTACCTCATAGATTCATCCCT
CCTGAGAACCGGAAGCCTCGGTTCCCCTTTAAGAGCAACCTTAAACACAGAAACTATTGG
AGTCCCGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACGTTTGCCCAGAGAGAGCTTCTGGAAAAACAAGGAATTGATATGAAACAGGAGATG
GAAAAAAGATTACAGGAAATGGAGATCCTATACAAAAAGGAGAAAGAGGAAGCAGATCTT
CTCCTGGAGCAACAGAGACTGGACGCGGATTCTGATAGCGGGGACGATTCTGACAAGAGG
TCCTGTGAAGAGAGCTGGAAACTGATTACTTCTCTGAGAGAAAAGCTACCTCCCAGCAAG
TTGCAAACCATTGTTAAAAAATGTGGCCTCCCTAGCAGTGGGAAGAAACGAGAACCAATT
AAAATGTATCAGATCCCCCAAAGAAGGCGCCTGAGTAAAGATTCCAAGTGGGTCACCATC
TCATATCTTAAGATTCAGGCCGTAAAAGAGATATGCTATGAGGTCGCTCTCAATGACTTC
AGGCACAGTCGGCAGGAGATTGAAGCCTTGGCCATTGTGAAGATGAAAGAGCTTTGTGCC
ATGTACGGGAAGAAAGATCCCAATGAGCGGGACTCCTGGAGGGCAGTGGCCATGGATGTC
TGGGACACTGTTGGTGTAGGGGATGAGAAGATTGAAGACATGATGGCCAGTAATAAAGGT
GGCACTGATGTAGATGACCTCAAGGTTCATATCGACAAGCTGGAGGATATTTTGCAAGAA
GTCAAAAAGCAAAATAACATGAAAGACGAGGAGATAAAAGTCTTAAGAAATAAAATGCTC
AAAATGGAGAAAGTCTTACCACTGATTGGGTCTCAGGAACAGAAGGCCCAGGGAAACCAC
AAAGCAAAGGAACCTGTTGGTGCTGGTGCCAGTAGCAAGTCTGAGAATGATGCAAGTAAA
AGAGACAGTGGAGAACTTGGCAAAGAAGAGCGTGTTTCCCAGCTGATGAATGGGGATCCA
GCGTTTCGACGTGGACGTCTGCGTTGGATGAGACAGGAACAAATTCGGTTCAAGAACCTG
CAGCAGCAGGAGATAACAAAGCAGCTTCGTCGGCAGAACGTACCTCATAGATTCATCCCT
CCTGAGAACCGGAAGCCTCGGTTCCCCTTTAAGAGCAACCTTAAACACAGAAACTATTGG
AGTCCCGGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26352580|dbj|BAC39920.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26352580|dbj|BAC39920.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               420-539, - strand, RNAz p=0.918088
               

               
               580-699, - strand, RNAz p=0.857821
               

               
               860-979, + strand, RNAz p=0.763127

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               420-539, - strand, RNAz p=0.918088
               

               
               580-699, - strand, RNAz p=0.857821
               

               
               860-979, + strand, RNAz p=0.763127

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB040881, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB040881, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               141-1088, gnl|bosTau2|chr16 (31746673-31747620)
               

               
               141-1088, gnl|Hg17|chr1 (10297486-10298433)
               

               
               141-1088, gnl|Mm7|chr4 (148228026-148227079)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-1088, gnl|bosTau2|chr16 (31746673-31747620)
               

               
               141-1088, gnl|Hg17|chr1 (10297486-10298433)
               

               
               141-1088, gnl|Mm7|chr4 (148228026-148227079)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hea (0.204499)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)

	420-539, - strand, RNAz p=0.918088
	580-699, - strand, RNAz p=0.857821
	860-979, + strand, RNAz p=0.763127

	141-1088, gnl\|bosTau2\|chr16 (31746673-31747620)
	141-1088, gnl\|Hg17\|chr1 (10297486-10298433)
	141-1088, gnl\|Mm7\|chr4 (148228026-148227079)