Ss1.1-Pig3-SRG8016E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTAAATTTTATTTGTAAAAAAAGCATTTCTATTTTTGTACAAAATTTTTACTGCCTCAG AAATAATGGAAGTTATTTATTGCCTACTGTTAACTTATTGGGTACCTAAAGAGCAGTTCT CTGTGCTAGCTAGATCCTTCTGAAGTAGTCTCTAGAGGAATCGTTCTAGGAATGGGCTTT TTTTCACCGTTGCTGCCCACGCTCTACAGCCAGAGCCTGCTGCAGCAGCAGGGCGCGGCC GGCAGCCAGAAGGAAGGTCCAGAGGGTGCAAACCTCTTTATTTACCACCTTCCACAGGAG TTTGGAGACCAGGACATCCTGCAGATGTTCATGCCTTTTGGAAATGTTATCTCTGCTAAA GTCTTCATTGACAAACAGACCAACCTGAGCAAGTGCTTTGGTTTTGTGAGCTACGACAAT CCAGTGTCCGCACAAGCTGCTATCCAGGCTATGAACTAGGCTCCCTACGGCATGAAACGC TTGAAGGTCCAGCCTCCTGCTCCCAAAAACGACAGCAAACCTTACTGATCCTAACCCCAG AGGCTCCCTGCTCTTATTTTAGCTCTCCCTAGACATCTTCATGCCCGTTAGTTCACCGTT TGCCTAGCATGTCCCTGTGGCGTCTCAAAAAAAAAGTTTCATCGTCCCGTCATTGTTTCT GATGTCTTTCTGACCTCACATCATATTTGGTTCTCCTACTGACCTTTGATCTAGTTTGAC CTTTGAAATTTGCATGTGACCTCATCTAGCTATGAATTCTGGGAAGTCAATGTGAAAAAC ATTGCTGCATTCATGCAAGACTGAAATTTATTATTAGACAAATTAATTATAGAAAAAAAC CTGTGGCAAAAATGTTTCTTTCTTTTTTTTTTTTTTTTCTTTTCATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTAAATTTTATTTGTAAAAAAAGCATTTCTATTTTTGTACAAAATTTTTACTGCCTCAG AAATAATGGAAGTTATTTATTGCCTACTGTTAACTTATTGGGTACCTAAAGAGCAGTTCT CTGTGCTAGCTAGATCCTTCTGAAGTAGTCTCTAGAGGAATCGTTCTAGGAATGGGCTTT TTTTCACCGTTGCTGCCCACGCTCTACAGCCAGAGCCTGCTGCAGCAGCAGGGCGCGGCC GGCAGCCAGAAGGAAGGTCCAGAGGGTGCAAACCTCTTTATTTACCACCTTCCACAGGAG TTTGGAGACCAGGACATCCTGCAGATGTTCATGCCTTTTGGAAATGTTATCTCTGCTAAA GTCTTCATTGACAAACAGACCAACCTGAGCAAGTGCTTTGGTTTTGTGAGCTACGACAAT CCAGTGTCCGCACAAGCTGCTATCCAGGCTATGAACTAGGCTCCCTACGGCATGAAACGC TTGAAGGTCCAGCCTCCTGCTCCCAAAAACGACAGCAAACCTTACTGATCCTAACCCCAG AGGCTCCCTGCTCTTATTTTAGCTCTCCCTAGACATCTTCATGCCCGTTAGTTCACCGTT TGCCTAGCATGTCCCTGTGGCGTCTCAAAAAAAAAGTTTCATCGTCCCGTCATTGTTTCT GATGTCTTTCTGACCTCACATCATATTTGGTTCTCCTACTGACCTTTGATCTAGTTTGAC CTTTGAAATTTGCATGTGACCTCATCTAGCTATGAATTCTGGGAAGTCAATGTGAAAAAC ATTGCTGCATTCATGCAAGACTGAAATTTATTATTAGACAAATTAATTATAGAAAAAAAC CTGTGGCAAAAATGTTTCTTTCTTTTTTTTTTTTTTTTCTTTTCATAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-192, gnl|bosTau2|chr13 (5641762-5641571) | |
| 1-192, gnl|Hg17|chr10 (11411851-11412040) | |
| 1-192, gnl|Mm7|chr2 (6463526-6463339) | |
| 255-411, gnl|bosTau2|chr10 (10680024-10679868) | |
| 255-411, gnl|canFam2|chr30 (38785106-38785262) | |
| 255-411, gnl|danRer3|chr4 (26634549-26634396) | |
| 255-411, gnl|dasNov1|scaffold_776 (114637-114793) | |
| 255-411, gnl|echTel1|scaffold_313239 (39842-39998) | |
| 255-411, gnl|fr1|chrUn (114792572-114792731) | |
| 255-411, gnl|galGal2|chr10 (1065345-1065176) | |
| 255-411, gnl|hg17|chr15 (70367693-70367852) | |
| 255-411, gnl|Hg17|chr15 (70367848-70367691) | |
| 255-411, gnl|loxAfr1|scaffold_5520 (100654-100810) | |
| 255-411, gnl|mm7|chr9 (59631379-59631223) | |
| 255-411, gnl|Mm7|chr9 (59631225-59631379) | |
| 255-411, gnl|monDom2|scaffold_14 (16926431-16926280) | |
| 255-411, gnl|oryCun1|scaffold_136968 (4193-4039) | |
| 255-411, gnl|panTro1|chr16 (71008110-71008269) | |
| 255-411, gnl|rheMac2|chr7 (50936901-50937060) | |
| 255-411, gnl|rn3|chr8 (63450592-63450436) | |
| 255-411, gnl|tetNig1|chr8 (8701976-8702129) | |
| 255-411, gnl|xenTro1|scaffold_1834 (68633-68474) | |
| 564-888, gnl|bosTau2|chr13 (5641188-5640871) | |
| 564-888, gnl|canFam2|chr2 (27849457-27849094) | |
| 564-888, gnl|danRer3|chr4 (26891356-26891857) | |
| 564-888, gnl|echTel1|scaffold_324151 (99617-99960) | |
| 564-888, gnl|fr1|chrUn (104022096-104021568) | |
| 564-888, gnl|galGal2|chr1 (4330586-4330230) | |
| 564-888, gnl|hg17|chr10 (11412362-11412702) | |
| 564-888, gnl|Hg17|chr10 (11412416-11412733) | |
| 564-888, gnl|loxAfr1|scaffold_1017 (14548-14206) | |
| 564-888, gnl|mm7|chr2 (6463010-6462679) | |
| 564-888, gnl|Mm7|chr2 (6462957-6462645) | |
| 564-888, gnl|monDom2|scaffold_30 (9943343-9943675) | |
| 564-888, gnl|oryCun1|scaffold_202279 (49343-48994) | |
| 564-888, gnl|panTro1|chr8 (11553220-11553561) | |
| 564-888, gnl|rheMac2|chr9 (11571401-11571743) | |
| 564-888, gnl|rn3|chr17 (83037052-83037388) | |
| 564-888, gnl|tetNig1|chrUn_random (29928292-29928790) | |
| 564-888, gnl|xenTro1|scaffold_314 (351339-350975) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-192, gnl|bosTau2|chr13 (5641762-5641571) | |
| 1-192, gnl|Hg17|chr10 (11411851-11412040) | |
| 1-192, gnl|Mm7|chr2 (6463526-6463339) | |
| 255-411, gnl|bosTau2|chr10 (10680024-10679868) | |
| 255-411, gnl|canFam2|chr30 (38785106-38785262) | |
| 255-411, gnl|danRer3|chr4 (26634549-26634396) | |
| 255-411, gnl|dasNov1|scaffold_776 (114637-114793) | |
| 255-411, gnl|echTel1|scaffold_313239 (39842-39998) | |
| 255-411, gnl|fr1|chrUn (114792572-114792731) | |
| 255-411, gnl|galGal2|chr10 (1065345-1065176) | |
| 255-411, gnl|hg17|chr15 (70367693-70367852) | |
| 255-411, gnl|Hg17|chr15 (70367848-70367691) | |
| 255-411, gnl|loxAfr1|scaffold_5520 (100654-100810) | |
| 255-411, gnl|mm7|chr9 (59631379-59631223) | |
| 255-411, gnl|Mm7|chr9 (59631225-59631379) | |
| 255-411, gnl|monDom2|scaffold_14 (16926431-16926280) | |
| 255-411, gnl|oryCun1|scaffold_136968 (4193-4039) | |
| 255-411, gnl|panTro1|chr16 (71008110-71008269) | |
| 255-411, gnl|rheMac2|chr7 (50936901-50937060) | |
| 255-411, gnl|rn3|chr8 (63450592-63450436) | |
| 255-411, gnl|tetNig1|chr8 (8701976-8702129) | |
| 255-411, gnl|xenTro1|scaffold_1834 (68633-68474) | |
| 564-888, gnl|bosTau2|chr13 (5641188-5640871) | |
| 564-888, gnl|canFam2|chr2 (27849457-27849094) | |
| 564-888, gnl|danRer3|chr4 (26891356-26891857) | |
| 564-888, gnl|echTel1|scaffold_324151 (99617-99960) | |
| 564-888, gnl|fr1|chrUn (104022096-104021568) | |
| 564-888, gnl|galGal2|chr1 (4330586-4330230) | |
| 564-888, gnl|hg17|chr10 (11412362-11412702) | |
| 564-888, gnl|Hg17|chr10 (11412416-11412733) | |
| 564-888, gnl|loxAfr1|scaffold_1017 (14548-14206) | |
| 564-888, gnl|mm7|chr2 (6463010-6462679) | |
| 564-888, gnl|Mm7|chr2 (6462957-6462645) | |
| 564-888, gnl|monDom2|scaffold_30 (9943343-9943675) | |
| 564-888, gnl|oryCun1|scaffold_202279 (49343-48994) | |
| 564-888, gnl|panTro1|chr8 (11553220-11553561) | |
| 564-888, gnl|rheMac2|chr9 (11571401-11571743) | |
| 564-888, gnl|rn3|chr17 (83037052-83037388) | |
| 564-888, gnl|tetNig1|chrUn_random (29928292-29928790) | |
| 564-888, gnl|xenTro1|scaffold_314 (351339-350975) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| ecc (0.345105) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.345105) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| jca (0.11396) | |
| ldo (0.0970026) |