Non-Coding RNA Search

Ss1.1-Pig3-SRG8016E19.5

Sequence:


               
               CGGCTCGAGGGAAGATGTGTACTGCGGGAGGGTTGTTTCAGTTTTCTTCAGCATCTGCAG
TCTTCCTCTCCCCACACGATTTATCAGTACTATCTCTGAACCACTACATTTTGCAGCTTT
ATAACCTCTGAATTACCTACAACATTTGAACCACTGAACTAGTGGAAAATAGAACTGGGG
GGGGAGTCCAGGGGTTTGGTGTACTTTGCCAAACAGCAAAGATTAAAGAAAGCTGAACAG
AGAACCTTTGTTTCTGGTTGCTTTCAATATATAAAGTTGAGATTATGATAAATGTCCTAT
CTCTACCTCTTCACATGCACAGGGTTTCAAACCCATTCAGGAACTAAAAGTTTGAGTGCT
TGGGGCTGCAAAGTGGAGGAGTCTGAAGACTGGGTGTCTGATGGGGAATAGTGTCATTAA
CATTTTGGGATCCTGTTACATGCTGAGCTCTGTTCTGAGTGCTTTGCATATATTACCTCC
TTTAATTCTCTGAAGTTTTTTTTCAGATTTATTTGAATTTCAGTGTTTACTTTTCAGATT
TACTTGAGCCCCTTAGTGTGTACTTTTTTTTCCCCACTTTTTAGGGCCCCACCCGTGGCA
TAATGAGGTTCCCGGGCTAGGGGTCTAATCAGAGCTACAGCTACTGGCTTACACCACGGC
CACAGCAACACCAGATCCTTAACT------------------------------------
------------------------GCTGTGCCATGACGGGAACTCCAGTGTATACTTCTT
TGTTGGCACCTTACCTTGGCCCCCAATACTTGCTTGGCAAATATTATTTGTTATTTTGAT
AAAGTTCTTAAGGGTAGAAACTGTCATGAGCTTTGTCATCATTTGGTATGTCCCATACTA
CTTAGTATCTTGCTTTGTGAGAAAAAAAGTATTGCATGCATTTATGACTGAAATCAATAA
ATAATAGATCATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTCGAGGGAAGATGTGTACTGCGGGAGGGTTGTTTCAGTTTTCTTCAGCATCTGCAG
TCTTCCTCTCCCCACACGATTTATCAGTACTATCTCTGAACCACTACATTTTGCAGCTTT
ATAACCTCTGAATTACCTACAACATTTGAACCACTGAACTAGTGGAAAATAGAACTGGGG
GGGGAGTCCAGGGGTTTGGTGTACTTTGCCAAACAGCAAAGATTAAAGAAAGCTGAACAG
AGAACCTTTGTTTCTGGTTGCTTTCAATATATAAAGTTGAGATTATGATAAATGTCCTAT
CTCTACCTCTTCACATGCACAGGGTTTCAAACCCATTCAGGAACTAAAAGTTTGAGTGCT
TGGGGCTGCAAAGTGGAGGAGTCTGAAGACTGGGTGTCTGATGGGGAATAGTGTCATTAA
CATTTTGGGATCCTGTTACATGCTGAGCTCTGTTCTGAGTGCTTTGCATATATTACCTCC
TTTAATTCTCTGAAGTTTTTTTTCAGATTTATTTGAATTTCAGTGTTTACTTTTCAGATT
TACTTGAGCCCCTTAGTGTGTACTTTTTTTTCCCCACTTTTTAGGGCCCCACCCGTGGCA
TAATGAGGTTCCCGGGCTAGGGGTCTAATCAGAGCTACAGCTACTGGCTTACACCACGGC
CACAGCAACACCAGATCCTTAACT------------------------------------
------------------------GCTGTGCCATGACGGGAACTCCAGTGTATACTTCTT
TGTTGGCACCTTACCTTGGCCCCCAATACTTGCTTGGCAAATATTATTTGTTATTTTGAT
AAAGTTCTTAAGGGTAGAAACTGTCATGAGCTTTGTCATCATTTGGTATGTCCCATACTA
CTTAGTATCTTGCTTTGTGAGAAAAAAAGTATTGCATGCATTTATGACTGAAATCAATAA
ATAATAGATCATAAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               12-258, gnl|bosTau2|chr15 (23821732-23821978)
               

               
               12-258, gnl|Hg17|chr11 (122440028-122440311)
               


               
               707-913, gnl|bosTau2|chr15 (23822272-23822476)
               

               
               707-913, gnl|Hg17|chr11 (122445502-122445697)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-258, gnl|bosTau2|chr15 (23821732-23821978)
               

               
               12-258, gnl|Hg17|chr11 (122440028-122440311)
               


               
               707-913, gnl|bosTau2|chr15 (23822272-23822476)
               

               
               707-913, gnl|Hg17|chr11 (122445502-122445697)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	12-258, gnl\|bosTau2\|chr15 (23821732-23821978)
	12-258, gnl\|Hg17\|chr11 (122440028-122440311)

	707-913, gnl\|bosTau2\|chr15 (23822272-23822476)
	707-913, gnl\|Hg17\|chr11 (122445502-122445697)