Non-Coding RNA Search

Ss1.1-Pig3-SRG8016G01.3

Sequence:


               
               CTGTGGCTGGTCCTGTCCCTTCTAGCAGGGTCGTGTGTTCGGGATGGCGGCGGGAGGTGA
CCATGACGGGCACGACAGCTACCGCTCGCCGCTTGCCTCCCGCTATGCCAGCCCGGAGAT
GTGCTTCGTGTTTAGCGACAGGTACAAATTCCGGACCTGGCGGCAGCTCTGGCTGTGGCT
GGCGGAGGCTGAGCAGACATTGGGTTTGCCTATCACCGACGAACAAATCCAGGAAATGAG
ATCACACCTGGACAACATCGACTTCAAGCTGGCAGCTGAGGAAGAGAAGCGGCTCCGACA
TGATGTGATGGCTCATGTGCACACGTTTGCCCACTGCTGTCCAAAAGCTGCCGCTATTAT
TCACCTCGGTGCCACCTCCTGCTATGTTGGGGACAATACCGATCTGATTATCCTTAGAAA
TGCATTTGACCTGCTTTTGCCAAAGCTTGCCAGAGTGATCTCTCGGCTTGCCGACTTTGC
CAAGGAACGGGCTGATCTACCCACCTTAGGTTTCACGCACTTCCAGCCTGCTCAGCTGAC
CACAGTTGGGAAGCGTTGCTGTCTTTGGATTCAAGATCTTTGCATGGATTTCCAAAACTT
GAAGCGTGTCCGAGATGACCTGCGCTTCCGAGGAGTGAAGGGTACCACTGGCACTCAGGC
CAGCTTCCTGCAGCTCTTCGAGGGAGATGACCAAAAGGTAGAGCAGCTTGACAAGATGGT
GACAGAAAAGGCGGGATTCAAGAGGGCTTTCATTATCACAGGGCAGACTTATACTCGAAA
AGTCGATATTGAGGTGCTCTCTGTGCTGGCCAGCTTGGGGGCATCGGTGCACAAGATTTG
TACTGACATACGACTCTTGGCAAACCTCAAGGAGATAGAGGAGCCCTTCGAAAAACAGCA
GATTGGCTCAAGCGCAATGCCGTACAAGCGGAACCCGATGCGCTCAGAGCGGTGCTGCAG
CCTCGCCCGTCACCTGATGACCCTTGTCATGGACCCACTGCAGACGGCGTCTGTGCAGTG
GTTTGAACGCACACTGGATGACAGTGCCAACCGACGTATCTGTTTGGCCGAGGCATTTCT
CACTGCAGATACGATACTGAATACGCTGCAGAACATTTCAGAAGGATTGGTGGTGTACCC
CAAAGTAATTGAGCGGCGCATTCGGCAAGAGCTGCCCTTCATGGCCACAGAAAACATCAT
TATGGCCATGGTGAAAGCTGGGGGTAACCGCCAGGATTGCCACGAGAAAATTAGAGTGCT
TTCCCAGCAGGCCGCTGCTGTGGTCAAGCAGGAAGGGGGTGACAATGACCTCATAGAGAG
AATCCAGGCTGATGCCTACTTCAGTCCCATTCACTCCCAGTTGGACCATTTACTGGATCC
TTCTTCTTTCACCGGCCGTGCATCCCATCAGGTACAGAGATTCTTAGAAGAAGAGGTGTA
TCCCCTGTTAAAACCATATGAAAATGTAATGAAGGTGAAAGCAGAATTATGTCTGTAGAG
TTGGAAGAAAATTAAATAAAAACAATTGTTGGCTTTTTAATTTTTATTGCCCAGTCATAA
AAACTATTATTTCTGTGCCTATTTTATCTCAAGAATTTGTTGCCCTAAATTAATACATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGGCTGGTCCTGTCCCTTCTAGCAGGGTCGTGTGTTCGGGATGGCGGCGGGAGGTGA
CCATGACGGGCACGACAGCTACCGCTCGCCGCTTGCCTCCCGCTATGCCAGCCCGGAGAT
GTGCTTCGTGTTTAGCGACAGGTACAAATTCCGGACCTGGCGGCAGCTCTGGCTGTGGCT
GGCGGAGGCTGAGCAGACATTGGGTTTGCCTATCACCGACGAACAAATCCAGGAAATGAG
ATCACACCTGGACAACATCGACTTCAAGCTGGCAGCTGAGGAAGAGAAGCGGCTCCGACA
TGATGTGATGGCTCATGTGCACACGTTTGCCCACTGCTGTCCAAAAGCTGCCGCTATTAT
TCACCTCGGTGCCACCTCCTGCTATGTTGGGGACAATACCGATCTGATTATCCTTAGAAA
TGCATTTGACCTGCTTTTGCCAAAGCTTGCCAGAGTGATCTCTCGGCTTGCCGACTTTGC
CAAGGAACGGGCTGATCTACCCACCTTAGGTTTCACGCACTTCCAGCCTGCTCAGCTGAC
CACAGTTGGGAAGCGTTGCTGTCTTTGGATTCAAGATCTTTGCATGGATTTCCAAAACTT
GAAGCGTGTCCGAGATGACCTGCGCTTCCGAGGAGTGAAGGGTACCACTGGCACTCAGGC
CAGCTTCCTGCAGCTCTTCGAGGGAGATGACCAAAAGGTAGAGCAGCTTGACAAGATGGT
GACAGAAAAGGCGGGATTCAAGAGGGCTTTCATTATCACAGGGCAGACTTATACTCGAAA
AGTCGATATTGAGGTGCTCTCTGTGCTGGCCAGCTTGGGGGCATCGGTGCACAAGATTTG
TACTGACATACGACTCTTGGCAAACCTCAAGGAGATAGAGGAGCCCTTCGAAAAACAGCA
GATTGGCTCAAGCGCAATGCCGTACAAGCGGAACCCGATGCGCTCAGAGCGGTGCTGCAG
CCTCGCCCGTCACCTGATGACCCTTGTCATGGACCCACTGCAGACGGCGTCTGTGCAGTG
GTTTGAACGCACACTGGATGACAGTGCCAACCGACGTATCTGTTTGGCCGAGGCATTTCT
CACTGCAGATACGATACTGAATACGCTGCAGAACATTTCAGAAGGATTGGTGGTGTACCC
CAAAGTAATTGAGCGGCGCATTCGGCAAGAGCTGCCCTTCATGGCCACAGAAAACATCAT
TATGGCCATGGTGAAAGCTGGGGGTAACCGCCAGGATTGCCACGAGAAAATTAGAGTGCT
TTCCCAGCAGGCCGCTGCTGTGGTCAAGCAGGAAGGGGGTGACAATGACCTCATAGAGAG
AATCCAGGCTGATGCCTACTTCAGTCCCATTCACTCCCAGTTGGACCATTTACTGGATCC
TTCTTCTTTCACCGGCCGTGCATCCCATCAGGTACAGAGATTCTTAGAAGAAGAGGTGTA
TCCCCTGTTAAAACCATATGAAAATGTAATGAAGGTGAAAGCAGAATTATGTCTGTAGAG
TTGGAAGAAAATTAAATAAAAACAATTGTTGGCTTTTTAATTTTTATTGCCCAGTCATAA
AAACTATTATTTCTGTGCCTATTTTATCTCAAGAATTTGTTGCCCTAAATTAATACATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3983439|gb|AAC83935.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3983439|gb|AAC83935.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               103-217, - strand, RNAz p=0.637233

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-217, - strand, RNAz p=0.637233

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               45-1089, gnl|bosTau2|chr29 (41401901-41400868)
               

               
               45-1089, gnl|Hg17|chr22 (39067083-39082145)
               

               
               45-1089, gnl|Mm7|chrX (91010213-91009256)
               


               
               1409-1616, gnl|bosTau2|chr5 (70132211-70132003)
               

               
               1409-1616, gnl|Hg17|chr22 (39086937-39087132)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-1089, gnl|bosTau2|chr29 (41401901-41400868)
               

               
               45-1089, gnl|Hg17|chr22 (39067083-39082145)
               

               
               45-1089, gnl|Mm7|chrX (91010213-91009256)
               


               
               1409-1616, gnl|bosTau2|chr5 (70132211-70132003)
               

               
               1409-1616, gnl|Hg17|chr22 (39086937-39087132)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               cut (0.509771)
               

               
               spl (0.429553)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.509771)
               

               
               spl (0.429553)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	45-1089, gnl\|bosTau2\|chr29 (41401901-41400868)
	45-1089, gnl\|Hg17\|chr22 (39067083-39082145)
	45-1089, gnl\|Mm7\|chrX (91010213-91009256)

	1409-1616, gnl\|bosTau2\|chr5 (70132211-70132003)
	1409-1616, gnl\|Hg17\|chr22 (39086937-39087132)

	cut (0.509771)
	spl (0.429553)
	cst (0.420109)
	amn (0.417711)
	thg (0.380373)
	cmu (0.372787)
	sme (0.305437)
	csk (0.281492)
	cga (0.279096)
	cov (0.264306)
	mas (0.210305)
	tes (0.207814)
	hea (0.204499)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	ill (0.175593)
	nco (0.161734)
	fco (0.157208)
	lun (0.150489)
	hyp (0.142837)
	ssp (0.13552)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)
	eje (0.0988338)