Non-Coding RNA Search

Ss1.1-Pig3-SRG8016I19.3

Sequence:


               
               GCGGGAGGAGTGGCAGTACGTGTTCCTCATCGCCTCCCTGGTGCACTACGGTGGCGTCAT
TTTCTACGGGGTTTTCGCTTCCGGAGAGAAGCAGCCGTGGGCAGAGCCTGAGGAGATGAG
CGAAGAGAAATGTGGCTTCGTTGGCCACGACCAGCTGGCTGGCAGTGACGAGAGCGAAAT
GGAGGATGAGGCCGAGCCCCCCGGGGCACCCCCTGCTCCCCCGCCCTCCTATGGGGCCAC
GCACAGCACAGTTCAACCCCCGAGACCCCCGCCCCCTGTCCGGGGGGCCTACTGACCACG
TGCCTCCGACCGGATGGCAGTTTCCAGGGCCTCCACTCCACACACCTCAGGCCTGAGTGG
CCGTGTCGAGGAAGCCCGGTCCTCTGCGCCCTGCCTCAGGCCAAGAAGCACTCTCCCTGT
TCCCAGTGCCGTCAAATCCTCCTCCCTCCCCGCCGCCTTTCAGGGTAGCGAAGCTCCGGC
CCCCCCCTCCCCGCAGGCAGTTTCAAGGATACCCACCAGGGACACCCACCAAGGATACCC
ACTTTCCCCTGAAGGCTCCCTTCTCCACCTGGTCGGCCTCAGTAGTGTCAAAGCTCTCCT
TTCAGGGCTTTGTTGGAAGGGACAGTTCCATCTCTTGTGGTTTTGGGCACTTCCCCCTTT
CCTTGAACCCCAGGGACTCTCAGGCTGACCCCCTGAGACTACTCAGCCTCTTTCTCATTT
CAGAAAAATTCAAGGTCTTCCCCTAGAAGTTTCAAATCTCTCCCAACACTACTCTGCATT
TGCCCGGTTGGTTTAACTCATCACCCATATGCACCATTCTCGGGGTTGATTCTCACCAGC
GTTTCTGGGGGGACATGGCAGTTTCAAGCACCTCCCCCACCTATCCACCCCTCCCTCCAC
CAGCAGACTCTGCTGAAGCACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGAGGAGTGGCAGTACGTGTTCCTCATCGCCTCCCTGGTGCACTACGGTGGCGTCAT
TTTCTACGGGGTTTTCGCTTCCGGAGAGAAGCAGCCGTGGGCAGAGCCTGAGGAGATGAG
CGAAGAGAAATGTGGCTTCGTTGGCCACGACCAGCTGGCTGGCAGTGACGAGAGCGAAAT
GGAGGATGAGGCCGAGCCCCCCGGGGCACCCCCTGCTCCCCCGCCCTCCTATGGGGCCAC
GCACAGCACAGTTCAACCCCCGAGACCCCCGCCCCCTGTCCGGGGGGCCTACTGACCACG
TGCCTCCGACCGGATGGCAGTTTCCAGGGCCTCCACTCCACACACCTCAGGCCTGAGTGG
CCGTGTCGAGGAAGCCCGGTCCTCTGCGCCCTGCCTCAGGCCAAGAAGCACTCTCCCTGT
TCCCAGTGCCGTCAAATCCTCCTCCCTCCCCGCCGCCTTTCAGGGTAGCGAAGCTCCGGC
CCCCCCCTCCCCGCAGGCAGTTTCAAGGATACCCACCAGGGACACCCACCAAGGATACCC
ACTTTCCCCTGAAGGCTCCCTTCTCCACCTGGTCGGCCTCAGTAGTGTCAAAGCTCTCCT
TTCAGGGCTTTGTTGGAAGGGACAGTTCCATCTCTTGTGGTTTTGGGCACTTCCCCCTTT
CCTTGAACCCCAGGGACTCTCAGGCTGACCCCCTGAGACTACTCAGCCTCTTTCTCATTT
CAGAAAAATTCAAGGTCTTCCCCTAGAAGTTTCAAATCTCTCCCAACACTACTCTGCATT
TGCCCGGTTGGTTTAACTCATCACCCATATGCACCATTCTCGGGGTTGATTCTCACCAGC
GTTTCTGGGGGGACATGGCAGTTTCAAGCACCTCCCCCACCTATCCACCCCTCCCTCCAC
CAGCAGACTCTGCTGAAGCACCCA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               2-160, - strand, RNAz p=0.808349
               

               
               321-436, - strand, RNAz p=0.971942
               

               
               638-750, - strand, RNAz p=0.925558
               

               
               662-762, - strand, RNAz p=0.99875

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-160, - strand, RNAz p=0.808349
               

               
               321-436, - strand, RNAz p=0.971942
               

               
               638-750, - strand, RNAz p=0.925558
               

               
               662-762, - strand, RNAz p=0.99875

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-475, gnl|bosTau2|chr18 (48577148-48576674)
               

               
               2-475, gnl|Hg17|chr19 (54625878-54625404)
               

               
               2-475, gnl|Mm7|chr7 (41350482-41350958)
               


               
               530-922, gnl|bosTau2|chr18 (48576658-48576255)
               

               
               530-922, gnl|canFam2|chr1 (109951604-109951123)
               

               
               530-922, gnl|dasNov1|scaffold_214733 (1030-580)
               

               
               530-922, gnl|hg17|chr19 (54624932-54625402)
               

               
               530-922, gnl|Hg17|chr19 (54625388-54624978)
               

               
               530-922, gnl|mm7|chr7 (41351405-41350962)
               

               
               530-922, gnl|Mm7|chr7 (41350974-41351369)
               

               
               530-922, gnl|monDom2|scaffold_105 (4384463-4385039)
               

               
               530-922, gnl|oryCun1|scaffold_97519 (3965-4349)
               

               
               530-922, gnl|panTro1|chr20 (51986566-51987037)
               

               
               530-922, gnl|rheMac2|chr19 (55682312-55682786)
               

               
               530-922, gnl|rn3|chr1 (95730474-95730034)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-475, gnl|bosTau2|chr18 (48577148-48576674)
               

               
               2-475, gnl|Hg17|chr19 (54625878-54625404)
               

               
               2-475, gnl|Mm7|chr7 (41350482-41350958)
               


               
               530-922, gnl|bosTau2|chr18 (48576658-48576255)
               

               
               530-922, gnl|canFam2|chr1 (109951604-109951123)
               

               
               530-922, gnl|dasNov1|scaffold_214733 (1030-580)
               

               
               530-922, gnl|hg17|chr19 (54624932-54625402)
               

               
               530-922, gnl|Hg17|chr19 (54625388-54624978)
               

               
               530-922, gnl|mm7|chr7 (41351405-41350962)
               

               
               530-922, gnl|Mm7|chr7 (41350974-41351369)
               

               
               530-922, gnl|monDom2|scaffold_105 (4384463-4385039)
               

               
               530-922, gnl|oryCun1|scaffold_97519 (3965-4349)
               

               
               530-922, gnl|panTro1|chr20 (51986566-51987037)
               

               
               530-922, gnl|rheMac2|chr19 (55682312-55682786)
               

               
               530-922, gnl|rn3|chr1 (95730474-95730034)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	2-160, - strand, RNAz p=0.808349
	321-436, - strand, RNAz p=0.971942
	638-750, - strand, RNAz p=0.925558
	662-762, - strand, RNAz p=0.99875

	2-475, gnl\|bosTau2\|chr18 (48577148-48576674)
	2-475, gnl\|Hg17\|chr19 (54625878-54625404)
	2-475, gnl\|Mm7\|chr7 (41350482-41350958)

	530-922, gnl\|bosTau2\|chr18 (48576658-48576255)
	530-922, gnl\|canFam2\|chr1 (109951604-109951123)
	530-922, gnl\|dasNov1\|scaffold_214733 (1030-580)
	530-922, gnl\|hg17\|chr19 (54624932-54625402)
	530-922, gnl\|Hg17\|chr19 (54625388-54624978)
	530-922, gnl\|mm7\|chr7 (41351405-41350962)
	530-922, gnl\|Mm7\|chr7 (41350974-41351369)
	530-922, gnl\|monDom2\|scaffold_105 (4384463-4385039)
	530-922, gnl\|oryCun1\|scaffold_97519 (3965-4349)
	530-922, gnl\|panTro1\|chr20 (51986566-51987037)
	530-922, gnl\|rheMac2\|chr19 (55682312-55682786)
	530-922, gnl\|rn3\|chr1 (95730474-95730034)