Non-Coding RNA Search

Ss1.1-Pig3-SRG8016J07.3

Sequence:


               
               ACATATTAGCCCTGGACACCTCCAGTTGCAATAAGCCATGTCCAGAATTTAAACCTGGCA
GCAGGTATATTGTGATGGGCCACATCTATCATAAAAGAAGGCAGCTACCTACAGCTCTGC
TTCAGGTCCTGAGGGGGCGCCTCCGACCCGGAGATGGACTAGTCAGGAGCAGCAGCAGCT
ATGTGAAAAGATTTAACCGAAAAAGGGATGGGCAAGTGCAAGGAGCAATTCACACCCAAT
GCATGTGAAACATTCCAGCCTGGCTCTTCTGGTTCCTCAAGAGACTTGGATTTCAGCAAC
AAGACGCGAAAGGCCTAGCATCACGTCATGGGGTTTTTCCCTTAGAATAGGGCACACGGC
TCCTTTATGAACTAGTTGTGAAGTGCTGACTCCAATCTTGAAGTGGTCACTTTTTTATTT
ACACAATGCTTCTTAAATGGTAGGCTTCTGAGCTCCAGTGGTAAAGTTATTCAACTGTAG
TGCCAGTTATTCCCACAGCCCAGATAACTGACCTGTCCAGTTAACAGATCACTGCTTCGT
GTTGTTTATGTTAATTATTTTAATTTAAATACATTCTTGAGTAGAAATAGTTCACAAAAA
CATTTCCTCGGTTTTAAATATACAATTGTTGAATAGTTTATATCATGTATCAAACCAAAT
TTTATACTAAAACCGTCACATTTTGAATTCTGTACATAACAGTAAGTGCACTAGTCAGAC
GTAGGACATGTCAGATCACGTTTAGATCAAACACACAAGTCACAGCCCAAGACAAGTATT
AAAGCTTTACACCTAAAGAGGACTGATGGGCTTAATTCAGGCAAACAAGTGTTTGTTCAA
ACAAATGTTCCTGATGTACCAAAATATAAGATAGTTTATTTCCATGCCTCCCTGCTTCAA
AAATCATGTTTTGTGCCATACTGGCAGCTATCTCAGTGCCAAACATTCTGGGTGTATCTG
ATGTCATTTTTCTCTTAAGACCAGGTATCATGTTTGTGTTTGTAAAGCAGTAAATCTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATATTAGCCCTGGACACCTCCAGTTGCAATAAGCCATGTCCAGAATTTAAACCTGGCA
GCAGGTATATTGTGATGGGCCACATCTATCATAAAAGAAGGCAGCTACCTACAGCTCTGC
TTCAGGTCCTGAGGGGGCGCCTCCGACCCGGAGATGGACTAGTCAGGAGCAGCAGCAGCT
ATGTGAAAAGATTTAACCGAAAAAGGGATGGGCAAGTGCAAGGAGCAATTCACACCCAAT
GCATGTGAAACATTCCAGCCTGGCTCTTCTGGTTCCTCAAGAGACTTGGATTTCAGCAAC
AAGACGCGAAAGGCCTAGCATCACGTCATGGGGTTTTTCCCTTAGAATAGGGCACACGGC
TCCTTTATGAACTAGTTGTGAAGTGCTGACTCCAATCTTGAAGTGGTCACTTTTTTATTT
ACACAATGCTTCTTAAATGGTAGGCTTCTGAGCTCCAGTGGTAAAGTTATTCAACTGTAG
TGCCAGTTATTCCCACAGCCCAGATAACTGACCTGTCCAGTTAACAGATCACTGCTTCGT
GTTGTTTATGTTAATTATTTTAATTTAAATACATTCTTGAGTAGAAATAGTTCACAAAAA
CATTTCCTCGGTTTTAAATATACAATTGTTGAATAGTTTATATCATGTATCAAACCAAAT
TTTATACTAAAACCGTCACATTTTGAATTCTGTACATAACAGTAAGTGCACTAGTCAGAC
GTAGGACATGTCAGATCACGTTTAGATCAAACACACAAGTCACAGCCCAAGACAAGTATT
AAAGCTTTACACCTAAAGAGGACTGATGGGCTTAATTCAGGCAAACAAGTGTTTGTTCAA
ACAAATGTTCCTGATGTACCAAAATATAAGATAGTTTATTTCCATGCCTCCCTGCTTCAA
AAATCATGTTTTGTGCCATACTGGCAGCTATCTCAGTGCCAAACATTCTGGGTGTATCTG
ATGTCATTTTTCTCTTAAGACCAGGTATCATGTTTGTGTTTGTAAAGCAGTAAATCTTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31795555|ref|NP_858041.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31795555|ref|NP_858041.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               57-223, gnl|bosTau2|chr19 (42943927-42944092)
               

               
               57-223, gnl|Hg17|chr17 (63418682-63418516)
               

               
               57-223, gnl|Mm7|chr11 (107138625-107138791)
               


               
               432-1020, gnl|bosTau2|chr19 (42944248-42944831)
               

               
               432-1020, gnl|Hg17|chr17 (63418311-63417689)
               

               
               432-1020, gnl|Mm7|chr11 (107138874-107139470)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-223, gnl|bosTau2|chr19 (42943927-42944092)
               

               
               57-223, gnl|Hg17|chr17 (63418682-63418516)
               

               
               57-223, gnl|Mm7|chr11 (107138625-107138791)
               


               
               432-1020, gnl|bosTau2|chr19 (42944248-42944831)
               

               
               432-1020, gnl|Hg17|chr17 (63418311-63417689)
               

               
               432-1020, gnl|Mm7|chr11 (107138874-107139470)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               gul (0.532765)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	57-223, gnl\|bosTau2\|chr19 (42943927-42944092)
	57-223, gnl\|Hg17\|chr17 (63418682-63418516)
	57-223, gnl\|Mm7\|chr11 (107138625-107138791)

	432-1020, gnl\|bosTau2\|chr19 (42944248-42944831)
	432-1020, gnl\|Hg17\|chr17 (63418311-63417689)
	432-1020, gnl\|Mm7\|chr11 (107138874-107139470)

	gul (0.532765)
	aor (0.390549)
	ret (0.3862)
	liv (0.292569)
	cbe (0.239234)
	mgp (0.230681)
	csp (0.161186)
	fat (0.147427)
	lin (0.145603)
	ste (0.135208)
	lyg (0.133103)
	cbl (0.114797)
	spc (0.113366)