Non-Coding RNA Search

Ss1.1-Pig3-SRG8016J22.5

Sequence:


               
               GCGCTCCCCACCCTGCAGTCCGAGCTACGATCTCACGGGCAAGGTGATGCTTCTGGGAGA
CTCGGGCGTCGGCAAAACCTGTTTCCTGATCCAATTCAAAGACGGGGCCTTCCTGTCCGG
GACCTTCATAGCCACGGTCGGCATATACTTCAAGAACAAGGTGGTGACCGTGGATGGAGT
GAGGGTGAAGCTGCATATCTGGGACACCGCATGGCATGAGCGCTTCCGCAGTGTCACCCA
CGCTTATTACCGAGATGCCCATGCCTTGCTCCTGCTGTATGACATCACCAACAAATCTTC
TTTCGACAACATCCGGGCCTGGCTCACTGAGATTCACGAGTACGCCCAGAGGGCAGGAGA
CACGCAGATTATGACCTAGAGGCACCTTTGCTTGAGCTCTTGACGCCAGGGGCAGGGGAG
CGGGGTGAGAAAGGTATGCGCTGCACATTTCTCAGGCTACTGCGTTTGCTTTCAAGGCAG
AAATCTTGCTCTCTGAGCAGAGTCAGCAGCTCTGATGGGCCTGACAGGCCGATAAGGAAG
CTCTCCGAGGCCTCTCCCAGGCAGAGCAGGGAGGAGCCTGACCTTGCAGGGGATCTTCTG
GGGCACAAGGCAGGTCGCAGACAATCCAATCACCTAGGCTGCTCCGGGCCTTTAGCATTT
GTGTATTCCAGAATTAAACTACAGTATTTGGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTCCCCACCCTGCAGTCCGAGCTACGATCTCACGGGCAAGGTGATGCTTCTGGGAGA
CTCGGGCGTCGGCAAAACCTGTTTCCTGATCCAATTCAAAGACGGGGCCTTCCTGTCCGG
GACCTTCATAGCCACGGTCGGCATATACTTCAAGAACAAGGTGGTGACCGTGGATGGAGT
GAGGGTGAAGCTGCATATCTGGGACACCGCATGGCATGAGCGCTTCCGCAGTGTCACCCA
CGCTTATTACCGAGATGCCCATGCCTTGCTCCTGCTGTATGACATCACCAACAAATCTTC
TTTCGACAACATCCGGGCCTGGCTCACTGAGATTCACGAGTACGCCCAGAGGGCAGGAGA
CACGCAGATTATGACCTAGAGGCACCTTTGCTTGAGCTCTTGACGCCAGGGGCAGGGGAG
CGGGGTGAGAAAGGTATGCGCTGCACATTTCTCAGGCTACTGCGTTTGCTTTCAAGGCAG
AAATCTTGCTCTCTGAGCAGAGTCAGCAGCTCTGATGGGCCTGACAGGCCGATAAGGAAG
CTCTCCGAGGCCTCTCCCAGGCAGAGCAGGGAGGAGCCTGACCTTGCAGGGGATCTTCTG
GGGCACAAGGCAGGTCGCAGACAATCCAATCACCTAGGCTGCTCCGGGCCTTTAGCATTT
GTGTATTCCAGAATTAAACTACAGTATTTGGAAAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|16741621|gb|AAH16615.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|16741621|gb|AAH16615.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               42-152, gnl|bosTau2|chr19 (51926717-51926607)
               

               
               42-152, gnl|Hg17|chr17 (70248500-70248610)
               

               
               42-152, gnl|Mm7|chr11 (115265970-115266080)
               


               
               348-696, gnl|bosTau2|chr19 (51921455-51921127)
               

               
               348-696, gnl|Hg17|chr17 (70254732-70255068)
               

               
               348-696, gnl|Mm7|chr11 (115270933-115271278)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-152, gnl|bosTau2|chr19 (51926717-51926607)
               

               
               42-152, gnl|Hg17|chr17 (70248500-70248610)
               

               
               42-152, gnl|Mm7|chr11 (115265970-115266080)
               


               
               348-696, gnl|bosTau2|chr19 (51921455-51921127)
               

               
               348-696, gnl|Hg17|chr17 (70254732-70255068)
               

               
               348-696, gnl|Mm7|chr11 (115270933-115271278)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               csp (0.161186)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	42-152, gnl\|bosTau2\|chr19 (51926717-51926607)
	42-152, gnl\|Hg17\|chr17 (70248500-70248610)
	42-152, gnl\|Mm7\|chr11 (115265970-115266080)

	348-696, gnl\|bosTau2\|chr19 (51921455-51921127)
	348-696, gnl\|Hg17\|chr17 (70254732-70255068)
	348-696, gnl\|Mm7\|chr11 (115270933-115271278)