Non-Coding RNA Search

Ss1.1-Pig3-SRG8016K06.3

Sequence:


               
               CGCTCTTTGGGGGCGCTGGGTCAGGGAGATCATATGCATAGCATGTTTTGAATTGCGAGG
CATCCGTGGTGAATGTTTAAGTGGTTGTGGCCTATTGAGTACATTTTCGTGTGTTCGGTG
GTGTTTGTCATGAAAACCTTCAACCAGCTGCGATAAAAAGACCATCCCTCGGCTAGAGGG
TTTTAAGCATCTGTAACTGCTATAAAACTAGCCATCCAGTTAGGATAGAATGTGCTTCTT
TCTGGTTAATGAAAACCATCTAAGAAAATATATATGTATGTATGTGTGTATACAGTGGAA
TTCAAGGACCAAAGCAAAATTTGAACAGGAATCTATTAATTTAGAATTTTATAAGATATT
TATTAATAAATGTTATTTTTAAACATTCCATTTGAACAATATTCTTCTGTAGGATCTGCT
TGTTTTTAAAGCATTAGTTGGTAATAAACTACTCTAGTCGCGTGTATCTTCATTTTTCAG
GGTTTCAATGGCTCTTTCCCATCATTGGGTGGAAATGTCTGTTTAGATCTCTGTGCATAG
AAATTTCAAGGATTTTTATTGCTCTGTGAGTTATTTTTTTAATCTACGTTCAGAGCAGTT
TAGAAACATCTATTTCTTTTCTCATTTTTAAAGTAAGCTCTTTCTTTTAGGAAGCAGAGT
TCCGCTAAAGGGAATAACTGGAACGGCTCTCTCATCAACATGTAAAAACAACTTCATCTC
TGCTTCTCCCTACCCCACCCCACCCCCAGCTTCCTAGAATGCCTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTCTTTGGGGGCGCTGGGTCAGGGAGATCATATGCATAGCATGTTTTGAATTGCGAGG
CATCCGTGGTGAATGTTTAAGTGGTTGTGGCCTATTGAGTACATTTTCGTGTGTTCGGTG
GTGTTTGTCATGAAAACCTTCAACCAGCTGCGATAAAAAGACCATCCCTCGGCTAGAGGG
TTTTAAGCATCTGTAACTGCTATAAAACTAGCCATCCAGTTAGGATAGAATGTGCTTCTT
TCTGGTTAATGAAAACCATCTAAGAAAATATATATGTATGTATGTGTGTATACAGTGGAA
TTCAAGGACCAAAGCAAAATTTGAACAGGAATCTATTAATTTAGAATTTTATAAGATATT
TATTAATAAATGTTATTTTTAAACATTCCATTTGAACAATATTCTTCTGTAGGATCTGCT
TGTTTTTAAAGCATTAGTTGGTAATAAACTACTCTAGTCGCGTGTATCTTCATTTTTCAG
GGTTTCAATGGCTCTTTCCCATCATTGGGTGGAAATGTCTGTTTAGATCTCTGTGCATAG
AAATTTCAAGGATTTTTATTGCTCTGTGAGTTATTTTTTTAATCTACGTTCAGAGCAGTT
TAGAAACATCTATTTCTTTTCTCATTTTTAAAGTAAGCTCTTTCTTTTAGGAAGCAGAGT
TCCGCTAAAGGGAATAACTGGAACGGCTCTCTCATCAACATGTAAAAACAACTTCATCTC
TGCTTCTCCCTACCCCACCCCACCCCCAGCTTCCTAGAATGCCTTGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               544-750, - strand, RNAz p=0.881151

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               544-750, - strand, RNAz p=0.881151

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-768, gnl|bosTau2|chr4 (38364975-38365756)
               

               
               2-768, gnl|Hg17|chr7 (28635838-28636615)
               

               
               2-768, gnl|Mm7|chr6 (53660895-53661615)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-768, gnl|bosTau2|chr4 (38364975-38365756)
               

               
               2-768, gnl|Hg17|chr7 (28635838-28636615)
               

               
               2-768, gnl|Mm7|chr6 (53660895-53661615)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	2-768, gnl\|bosTau2\|chr4 (38364975-38365756)
	2-768, gnl\|Hg17\|chr7 (28635838-28636615)
	2-768, gnl\|Mm7\|chr6 (53660895-53661615)